# format: sets
# version: 1.2
# strain: EcolA
# date: 2013/09/23
# comment: BioCyc pathways
1CMET2-PWY formylTHF biosynthesis I FOLA FOLC FOLD GCVH GCVP GCVT GLYA LPDA METF METH PURU THYA YDGB
2PHENDEG-PWY phenylethylamine degradation FEAB TYNA
4AMINOBUTMETAB-PWY 4-aminobutyrate degradation I B1525 GABD GABT GOAG
ACETATEUTIL-PWY superpathway of acetate utilization and formation ACKA ACS PTA
ACETOACETATE-DEG-PWY acetoacetate degradation (to acetyl CoA) ATOA ATOB ATOD
ALADEG-PWY alanine degradation I ALR DADA DADX
ALANINE-SYN2-PWY alanine biosynthesis II ILVE
ALANINE-VALINESYN-PWY alanine biosynthesis I ALR AVTA DADX ILVE
ALKANEMONOX-PWY two-component alkanesulfonate monooxygenase YCBN YCBP
ALL-CHORISMATE-PWY superpathway of chorismate AROA AROB AROC AROD AROE AROF AROG AROH AROK AROL ASPC ENTA ENTB ENTC ENTD ENTE ENTF FOLA FOLC FOLD FOLE FOLK FOLP MENA MENB MENC MEND MENE MENF NTPA PABA PABB PABC PHEA PURN TRPA TRPB TRPC TRPD TRPE TYRA TYRB UBIA UBIB UBIC UBIE UBIG UBIH UBIX YDGB YDIB YFBB YGIG YIGC YIGR YLEB
AMMASSIM-PWY superpathway of glutamate biosynthesis GLNA GLTB GLTD
ANARESP1-PWY respiration (anaerobic) ACEE ACEF ACNB ENO FDHF FRDA FRDB FRDC FRDD FUMA FUMB FUMC GLTA HYCB HYCC HYCD HYCE HYCF HYCG ICDA LPDA MDH PFLB PPC PYKA PYKF TDCE
ARABCAT-PWY L-arabinose degradation I ARAA ARAB ARAD
ARCB-PWY ArcAB Two-Component Signal Transduction System B2340
ARG+POLYAMINE-SYN superpathway of arginine and polyamine biosynthesis ARGA ARGB ARGC ARGD ARGE ARGF ARGG ARGH ARGI CADA CARA CARB LDCC SPEA SPEB SPEC SPED SPEE
ARGDEG-PWY superpathway of arginine, putrescine, and 4-aminobutyrate degradation ADIA ALDH B1297 B1444 B1525 GABD GABT GOAG ORDL SPEB YCJL YGJG
ARGSYN-PWY arginine biosynthesis I ARGA ARGB ARGC ARGD ARGE ARGF ARGG ARGH ARGI CARA CARB
ARO-PWY chorismate biosynthesis I AROA AROB AROC AROD AROE AROF AROG AROH AROK AROL YDIB
ASPARAGINE-BIOSYNTHESIS asparagine biosynthesis I ASNB
ASPARAGINESYN-PWY asparagine biosynthesis II ASNA ASNB
ASPARTATESYN-PWY aspartate biosynthesis ASPC
ASPASN-PWY superpathway of aspartate and asparagine biosynthesis; interconversion of aspartate and asparagine ANSA ANSB ASNA ASNB ASPA ASPC YBIK
AST-PWY arginine degradation II (AST pathway) B1745 B1746 B1747 CSTC YDJS
BETSYN-PWY glycine betaine biosynthesis I (Gram-negative bacteria) BETA BETB
BGALACT-PWY lactose degradation III LACZ
BIOTIN-SYNTHESIS-PWY biotin biosynthesis I BIOA BIOB BIOD BIOF
BRANCHED-CHAIN-AA-SYN-PWY superpathway of leucine, valine, and isoleucine biosynthesis ILVA ILVB ILVC ILVD ILVE ILVG_1 ILVH ILVI ILVM ILVN LEUA LEUB LEUC LEUD TYRB
BSUBPOLYAMSYN-PWY spermidine biosynthesis SPED SPEE
CARNMET-PWY carnitine degradation I CAIA CAIB CAIC CAID
CHE-PWY Chemotactic Signal Transduction System CHEB CHER
COA-PWY coenzyme A biosynthesis COAA DFP KDTB YACE
COBALSYN-PWY adenosylcobalamin salvage from cobinamide I BTUR COBS COBT COBU PHPB
COLANSYN-PWY colanic acid building blocks biosynthesis CPSB CPSG GALE GALF GALK GALT GALU GMD MANA PGI UGD WCAG
COMPLETE-ARO-PWY superpathway of phenylalanine, tyrosine, and tryptophan biosynthesis AROA AROB AROC AROD AROE AROF AROG AROH AROK AROL ASPC PHEA TRPA TRPB TRPC TRPD TRPE TYRA TYRB YDIB
CYANCAT-PWY cyanate degradation CYNS CYNT
CYSTSYN-PWY cysteine biosynthesis I CYSE CYSM CYSZ
DAPLYSINESYN-PWY lysine biosynthesis I ARGD ASD DAPA DAPB DAPD DAPE DAPF LYSA LYSC
DARABCATK12-PWY D-arabinose degradation I ALDA FUCA FUCI FUCK
DENOVOPURINE2-PWY purine nucleotides de novo biosynthesis I ADK GMK GUAA GUAB NDK NRDA NRDB NRDD NRDE PURA PURB PURC PURD PURE PURH PURK PURL PURM PURT YGAD
DETOX1-PWY superoxide radicals degradation KATE KATG SODA SODB SODC
DTDPRHAMSYN-PWY dTDP-L-rhamnose biosynthesis I RFBA RFBB RFBC RFBD
ECASYN-PWY enterobacterial common antigen biosynthesis RFE RFFG RFFH WECB WECC WECD WECE WECF WECG
ENTBACSYN-PWY enterobactin biosynthesis ENTA ENTB ENTC ENTD ENTE ENTF
ENTNER-DOUDOROFF-PWY Entner-Doudoroff pathway I EDA EDD
ETOH-ACETYLCOA-ANA-PWY ethanol degradation ADHC ADHP MHPF
FAO-PWY fatty acid β-oxidation I AIDB B1695 B2341 B2342 FADA FADB FADD MAOC UBIB YAFH YDID
FASYN-ELONG-PWY fatty acid elongation -- saturated FABA FABB FABF FABG FABI FABZ
FASYN-INITIAL-PWY superpathway of fatty acid biosynthesis initiation (E. coli) ACCA ACCB FABB FABD FABF FABG FABH USG
FERMENTATION-PWY mixed acid fermentation ACKA ACNB ADHC ADHP FDHF FRDA FRDB FRDC FRDD FUMA FUMB FUMC GLTA HYCB HYCC HYCD HYCE HYCF HYCG ICDA LDHA MDH PFLB PPC PTA PYKA PYKF TDCE
FOLSYN-PWY tetrahydrofolate biosynthesis FOLA FOLC FOLD FOLE FOLK FOLP NTPA PABA PABB PABC PURN YDGB YGIG
FUC-RHAMCAT-PWY superpathway of fucose and rhamnose degradation ALDA FUCA FUCI FUCK FUCO LLDD RHAA RHAB RHAD
FUCCAT-PWY fucose degradation FUCA FUCI FUCK
GALACT-GLUCUROCAT-PWY superpathway of hexuronide and hexuronate degradation KDGK UIDA UXAA UXAB UXAC UXUA UXUB
GALACTARDEG-PWY D-galactarate degradation YHAD YHAE YHAF YHAG
GALACTCAT-PWY D-galactonate degradation DGOA DGOK SRLA
GALACTITOLCAT-PWY galactitol degradation AGAY AGAZ GATD GATY GATZ PFKB
GALACTMETAB-PWY galactose degradation I (Leloir pathway) GALE GALF GALK GALM GALT GALU
GALACTUROCAT-PWY D-galacturonate degradation KDGK UXAA UXAB UXAC
GLCMANNANAUT-PWY superpathway of N-acetylglucosamine, N-acetylmannosamine and N-acetylneuraminate degradation NAGA NAGB NANA YHCI YHCJ
GLNSYN-PWY glutamine biosynthesis I GLNA
GLUAMCAT-PWY N-acetylglucosamine degradation NAGA NAGB
GLUCARDEG-PWY D-glucarate degradation YGCX YHAD YHAE YHAF
GLUCARGALACTSUPER-PWY superpathway of D-glucarate and D-galactarate degradation YGCX YHAD YHAE YHAF YHAG
GLUCONEO-PWY gluconeogenesis I B2097 B2463 ENO FBA FBP GAPA GLPX GPMA GPMB MDH PCKA PGI PGK PPC PPSA SFCA YBHA YGGF YIBO
GLUCONSUPER-PWY superpathway of gluconate degradation EDA EDD GND GNTK IDNK RPIA RPIB
GLUCOSE1PMETAB-PWY glucose and glucose-1-phosphate degradation AGP ASD B0822 GCD GLK PGM YIDA YIGL YIHX
GLUCUROCAT-PWY β-D-glucuronide and D-glucuronate degradation KDGK UIDA UXAC UXUA UXUB
GLUT-REDOX-PWY glutathione redox reactions II GOR
GLUTAMINDEG-PWY glutamine degradation I YBAS YNEH
GLUTATHIONESYN-PWY glutathione biosynthesis GSHA GSHB
GLUTDEG-PWY glutamate degradation II ASPA ASPC
GLUTORN-PWY ornithine biosynthesis ARGA ARGB ARGC ARGD ARGE CSTC
GLUTSYN-PWY glutamate biosynthesis I GLTB GLTD
GLUTSYNIII-PWY glutamate biosynthesis III GDHA
GLYCEROLMETAB-PWY glycerol degradation V GLDA
GLYCLEAV-PWY glycine cleavage complex GCVP GCVT LPDA
GLYCOCAT-PWY glycogen degradation I GLGP GLGX GLK MALP MALQ MALZ PGM
GLYCOGENSYNTH-PWY glycogen biosynthesis I (from ADP-D-Glucose) GLGA GLGB GLGC
GLYCOL-GLYOXDEG-PWY superpathway of glycol metabolism and degradation ALDA FUCO GCL GLCB GLCD GLCF YBBQ YBBZ
GLYCOLATEMET-PWY glycolate and glyoxylate degradation I GCL GLCD GLCF YBBQ YBBZ
GLYCOLYSIS glycolysis I B2097 ENO FBA FBP GAPA GLPX GPMA GPMB PFKA PFKB PGI PGK PPSA PYKA PYKF TPIA YBHA YGGF YIBO
GLYCOLYSIS-E-D superpathway of glycolysis and Entner-Doudoroff B2097 EDA EDD ENO FBA FBP GAPA GLPX GPMA GPMB PFKA PFKB PGI PGK PPSA PYKA PYKF TPIA YBHA YBHE YGGF YIBO ZWF
GLYCOLYSIS-TCA-GLYOX-BYPASS superpathway of glycolysis, pyruvate dehydrogenase, TCA, and glyoxylate bypass ACEA ACEB ACEE ACEF ACNA ACNB B2097 ENO FBA FBP FUMA FUMB FUMC GAPA GLPX GLTA GPMA GPMB ICDA LPDA MDH PFKA PFKB PGI PGK PPSA PYKA PYKF SDHA SDHB SDHC SDHD SUCA SUCB SUCC SUCD TPIA YBHA YGGF YIBO YOJH
GLYOXDEG-PWY glycolate and glyoxylate degradation II GLCB GLCD GLCF
GLYOXYLATE-BYPASS glyoxylate cycle ACEA ACEB ACNA ACNB GLTA MDH
GLYSYN-PWY glycine biosynthesis I GLYA
HCAMHPDEG-PWY 3-phenylpropionate and 3-(3-hydroxyphenyl)propionate degradation to 2-oxopent-4-enoate HCAA1 HCAA2 HCAB HCAC HCAD MHPA MHPB MHPC
HEME-BIOSYNTHESIS-II heme biosynthesis from uroporphyrinogen-III I HEMC HEMF HEMG HEMH
HEMESYN2-PWY heme biosynthesis from uroporphyrinogen-III II HEMC HEMG HEMH HEMN
HEXITOLDEGSUPER-PWY superpathway of hexitol degradation MTLD SRLD
HISTSYN-PWY histidine biosynthesis HISA HISB HISC HISD HISF HISG HISH HISI
HOMOSER-METSYN-PWY methionine biosynthesis I MALY META METB METC METE METH
HOMOSER-THRESYN-PWY threonine biosynthesis from homoserine THRB THRC
HOMOSERSYN-PWY homoserine biosynthesis ASD LYSC METL THRA
IDNCAT-PWY L-idonate degradation IDND IDNK IDNO
ILEUSYN-PWY isoleucine biosynthesis I (from threonine) ILVA ILVB ILVC ILVD ILVE ILVG_1 ILVH ILVI ILVM ILVN
KDO-LIPASYN-PWY KDO2-lipid A biosynthesis I HTRB MSBB
KDO-NAGLIPASYN-PWY superpathway of KDO2-lipid A biosynthesis DDG GUTQ HLPA HTRB KDSA KDSB KDTA LPXA LPXB LPXC MSBB YBBF YCAH YRBH YRBI
KDOSYN-PWY KDO transfer to lipid IVA KDTA
KETOGLUCONMET-PWY ketogluconate metabolism IDND IDNK IDNO YAFB YIAE YQHE
LCYSDEG-PWY L-cysteine degradation II METC TNAA
LEUSYN-PWY leucine biosynthesis ILVE LEUA LEUB LEUC LEUD TYRB
LIPA-CORESYN-PWY Lipid A-core biosynthesis RFAB RFAC RFAF RFAG RFAI RFAJ RFAK RFAP RFAQ RFAY
LPSSYN-PWY superpathway of lipopolysaccharide biosynthesis GUTQ HLPA HTRB KDSA KDSB KDTA LPXA LPXB LPXC MSBB RFAB RFAC RFAF RFAG RFAI RFAJ RFAK RFAP RFAQ RFAY YBBF YCAH YRBH YRBI
LYXMET-PWY L-lyxose degradation ARAD LYXK RHAA SGBE SGBU
MANNCAT-PWY D-mannose degradation MANA
MANNIDEG-PWY mannitol degradation I MTLD
MENAQUINONESYN-PWY menaquinone-8 biosynthesis UBIE
MET-SAM-PWY methionine and methyl-donor-molecule biosynthesis ASD MALY META METB METC METE METH METK METL
METHGLYUT-PWY superpathway of methylglyoxal degradation ALDA B1781 B3001 DLD GLDA GLOA GLOB LLDD YAFB YEIG YQHE
METSYN-PWY homoserine and methionine biosynthesis ASD MALY META METB METC METE METH METL
NADPHOS-DEPHOS-PWY NAD phosphorylation and dephosphorylation PNTA PNTB YFJB
NAGLIPASYN-PWY lipid-A-precursor biosynthesis HLPA LPXA LPXB LPXC YBBF YCAH
NONMEVIPP-PWY methylerythritol phosphate pathway B2889 DXS GCPE LYTB YAEM YCHB YGBB YGBP
NONOXIPENT-PWY pentose phosphate pathway (non-oxidative branch) RPE RPIA RPIB TALA TALB TKTA TKTB
NRI-PWY Nitrogen Regulation Two-Component System GLNA GLND GLNE
OANTIGEN-PWY O-antigen biosynthesis (E. coli) GLF GLMS GLMU MRSA RFBA RFBB RFBC RFBD
ORNARGDEG-PWY superpathway of arginine and ornithine degradation ADIA ALDH B1297 B1444 B1525 GABD GABT GOAG ORDL SPEB SPEF YCJL YGJG
ORNDEG-PWY superpathway of ornithine degradation ALDH B1297 B1444 ORDL SPEF YCJL YGJG
OXIDATIVEPENT-PWY pentose phosphate pathway (oxidative branch) GND YBHE ZWF
P2-PWY 2'-(5'-phosphoribosyl)-3'-dephospho-CoA biosynthesis I (citrate lyase) CITG YBDU
P4-PWY superpathway of lysine, threonine and methionine biosynthesis I ARGD ASD ASPC DAPA DAPB DAPD DAPE DAPF LYSA LYSC MALY META METB METC METE METH METL THRA THRB THRC
PANTO-PWY pantothenate biosynthesis I APBA PANB PANC
PANTOSYN-PWY pantothenate and coenzyme A biosynthesis I APBA COAA DFP KDTB PANB PANC PAND YACE
PENTOSE-P-PWY pentose phosphate pathway GND RPE RPIA RPIB TALA TALB TKTA TKTB YBHE ZWF
PEPTIDOGLYCANSYN-PWY peptidoglycan biosynthesis III DDLA DDLB MRAY MURA MURB MURC MURD MURE MURF MURG MURI
PHESYN phenylalanine biosynthesis I ASPC PHEA TYRA TYRB
PHOSLIPSYN-PWY phospholipid biosynthesis I CDSA CLS GPSA PGPA PGPB PGSA PLSB PLSC PSD PSSA YBHO
PLPSAL-PWY pyridoxal 5'-phosphate salvage pathway PDXH PDXY THIJ
POLYAMSYN-PWY superpathway of polyamine biosynthesis I CADA LDCC SPEA SPEB SPEC SPED SPEE
POLYISOPRENSYN-PWY polyisoprenoid biosynthesis (E. coli) B2889 ISPA ISPB YAES
PPGPPMET-PWY ppGpp biosynthesis GPPA GPT RELA SPOT
PROPIONMET-PWY methylmalonyl pathway SBM
PROSYN-PWY proline biosynthesis I PROA PROB PROC
PROUT-PWY proline degradation I PUTA
PRPP-PWY superpathway of histidine, purine, and pyrimidine biosynthesis ADK CARA CARB DEOB GMK GUAA GUAB HISA HISB HISC HISD HISF HISG HISH HISI NDK NRDA NRDB NRDD NRDE PHNN PRSA PURA PURB PURC PURD PURE PURH PURK PURL PURM PURT PYRB PYRC PYRD PYRE PYRF PYRG PYRH PYRI YGAD
PUTDEG-PWY putrescine degradation I B1444 YGJG
PWY-1269 CMP-KDO biosynthesis I GUTQ KDSA KDSB YRBH YRBI
PWY-1801 formaldehyde oxidation II (glutathione-dependent) ADHC YAIM YEIG
PWY-2161 folate polyglutamylation I FOLC GLYA
PWY-40 putrescine biosynthesis I SPEA SPEB
PWY-4381 fatty acid biosynthesis initiation I ACCA ACCB FABD FABG FABH USG
PWY-46 putrescine biosynthesis III SPEC
PWY-5084 2-ketoglutarate dehydrogenase complex LPDA SUCA SUCB
PWY-5123 trans,trans-farnesyl diphosphate biosynthesis B2889 ISPA
PWY-5155 β-alanine biosynthesis IV PAND
PWY-5162 2-oxopentenoate degradation MHPD MHPE MHPF
PWY-5188 tetrapyrrole biosynthesis I GLTX HEMA HEMB HEMC HEMD HEML
PWY-5194 siroheme biosynthesis CYSG
PWY-5340 sulfate activation for sulfonation CYSC CYSD CYSN
PWY-5386 methylglyoxal degradation I DLD GLOA GLOB YEIG
PWY-5436 threonine degradation IV ADHC MHPF YBJU
PWY-5437 threonine degradation I ACKA PFLB PTA TDCB TDCD TDCE
PWY-5448 aminopropanol biosynthesis GLDA TDH
PWY-5453 methylglyoxal degradation III B1781 B3001 GLDA YAFB YQHE
PWY-5459 methylglyoxal degradation IV ALDA LLDD
PWY-5659 GDP-mannose biosynthesis CPSB CPSG MANA PGI
PWY-5667 CDP-diacylglycerol biosynthesis I CDSA GPSA PLSB PLSC
PWY-5668 cardiolipin biosynthesis I CLS PGPA PGPB PGSA YBHO
PWY-5669 phosphatidylethanolamine biosynthesis I PSD PSSA
PWY-5686 uridine-5'-phosphate biosynthesis CARA CARB PYRB PYRC PYRD PYRE PYRF PYRI
PWY-5687 pyrimidine ribonucleotides interconversion NDK PYRG PYRH
PWY-5698 allantoin degradation to ureidoglycolate II (ammonia producing) YBBX YLBB
PWY-5783 octaprenyl diphosphate biosynthesis ISPB
PWY-5785 di-trans,poly-cis-undecaprenyl diphosphate biosynthesis YAES
PWY-5837 1,4-dihydroxy-2-naphthoate biosynthesis I MENB MENC MEND MENE MENF YFBB
PWY-5838 superpathway of menaquinone-8 biosynthesis I ISPB MENA MENB MENC MEND MENE MENF UBIE YFBB
PWY-5852 demethylmenaquinone-8 biosynthesis II MENA
PWY-5901 2,3-dihydroxybenzoate biosynthesis ENTA ENTB ENTC
PWY-5965 fatty acid biosynthesis initiation III FABB FABF
PWY-5966 fatty acid biosynthesis initiation II FABB FABF FABH
PWY-5971 palmitate biosynthesis II (bacteria and plants) FABB FABG FABZ
PWY-5973 cis-vaccenate biosynthesis FABA FABF FABG FABZ
PWY-6071 superpathway of phenylethylamine degradation B1391 B1392 B1394 B1397 B1398 FEAB MAOC TYNA YDBO YDBP YDBS YDBU YNBF
PWY-6121 5-aminoimidazole ribonucleotide biosynthesis I PURC PURD PURL PURM PURN
PWY-6122 5-aminoimidazole ribonucleotide biosynthesis II PURC PURD PURL PURM PURT
PWY-6123 inosine-5'-phosphate biosynthesis I PURB PURC PURE PURH PURK
PWY-6125 guanosine nucleotides de novo biosynthesis GMK GUAA GUAB NDK NRDA NRDB NRDD NRDE YGAD
PWY-6126 adenosine nucleotides de novo biosynthesis ADK NDK NRDA NRDB NRDD NRDE PURA PURB YGAD
PWY-6151 S-adenosyl-L-methionine cycle I METE METK PFS YGAG
PWY-6153 autoinducer AI-2 biosynthesis I PFS YGAG
PWY-6277 superpathway of 5-aminoimidazole ribonucleotide biosynthesis PURC PURD PURL PURM PURN PURT
PWY-6282 palmitoleate biosynthesis I FABB FABG FABI FABZ TESA
PWY-6284 superpathway of unsaturated fatty acids biosynthesis (E. coli) FABA FABB FABF FABG FABI FABZ TESA
PWY-66 GDP-L-fucose biosynthesis I (from GDP-D-mannose) GMD WCAG
PWY-901 methylglyoxal degradation II DLD
PWY0-1021 alanine biosynthesis III YFHO
PWY0-1061 superpathway of alanine biosynthesis ALR AVTA DADX ILVE YFHO
PWY0-1182 trehalose degradation II (trehalase) GLK TREA TREF
PWY0-1221 putrescine degradation II ALDH B1297 ORDL YCJL
PWY0-1241 ADP-L-glycero-β-D-manno-heptose biosynthesis B3052 GMHA RFAD YAED
PWY0-1261 1,6-anhydro-N-acetylmuramic acid recycling B1640 YFEU
PWY0-1264 biotin-carboxyl carrier protein ACCA BIRA FABG USG
PWY0-1275 lipoate biosynthesis and incorporation II LIPA LPLA
PWY0-1277 3-phenylpropionate and 3-(3-hydroxyphenyl)propionate degradation HCAA1 HCAA2 HCAB HCAC HCAD MHPA MHPB MHPC MHPD MHPE MHPF
PWY0-1280 ethylene glycol degradation ALDA FUCO
PWY0-1295 degradation of pyrimidine ribonucleosides CDD DEOB UDP
PWY0-1296 degradation of purine ribonucleosides ADD DEOB DEOD XAPA
PWY0-1297 purine deoxyribonucleosides degradation ADD ADHC DEOB DEOC DEOD MHPF
PWY0-1298 pyrimidine deoxyribonucleosides degradation ADHC CDD DEOA DEOB DEOC MHPF
PWY0-1299 arginine dependent acid resistance ADIA
PWY0-1300 2-O-α-mannosyl-D-glycerate degradation YBGG YHAD
PWY0-1301 melibiose degradation MELA
PWY0-1303 aminopropylcadaverine biosynthesis CADA LDCC SPEE
PWY0-1305 glutamate dependent acid resistance GADA GADB
PWY0-1306 L-galactonate degradation YJJN
PWY0-1309 chitobiose degradation CELF YCFX
PWY0-1312 acetate formation from acetyl-CoA I ACKA PTA
PWY0-1313 acetate conversion to acetyl-CoA ACS
PWY0-1314 fructose degradation FRUK
PWY0-1315 L-lactaldehyde degradation (anaerobic) FUCO
PWY0-1317 L-lactaldehyde degradation (aerobic) ALDA LLDD
PWY0-1319 CDP-diacylglycerol biosynthesis II CDSA GPSA PLSB PLSC
PWY0-1321 formate to nitrate electron transfer FDNG FDNH FDNI FDOG FDOH FDOI NARG NARH NARI NARV NARY NARZ
PWY0-1324 N-acetylneuraminate and N-acetylmannosamine degradation NANA YHCI YHCJ
PWY0-1325 superpathway of asparagine biosynthesis ASNA ASNB
PWY0-1329 succinate to cytochrome bo oxidase electron transfer CYOA CYOB CYOC CYOD SDHA SDHB SDHC SDHD
PWY0-1334 NADH to cytochrome bd oxidase electron transfer APPB APPC CYDA CYDB NUOA NUOB NUOC NUOE NUOF NUOG NUOH NUOI NUOJ NUOK NUOL NUON WRBA YIEF
PWY0-1335 NADH to cytochrome bo oxidase electron transfer CYOA CYOB CYOC CYOD NUOA NUOB NUOC NUOE NUOF NUOG NUOH NUOI NUOJ NUOK NUOL NUON WRBA YIEF
PWY0-1336 NADH to fumarate electron transfer FRDA FRDB FRDC FRDD NUOA NUOB NUOC NUOE NUOF NUOG NUOH NUOI NUOJ NUOK NUOL NUON WRBA YIEF
PWY0-1337 oleate β-oxidation FADB YBAW
PWY0-1338 biosynthesis of 4-amino-4-deoxy-L-arabinose-modified lipid A B2253 B2254 B2255
PWY0-1347 NADH to trimethylamine N-oxide electron transfer BISZ NUOA NUOB NUOC NUOE NUOF NUOG NUOH NUOI NUOJ NUOK NUOL NUON TORA TORC WRBA YECK YIEF
PWY0-1348 NADH to dimethyl sulfoxide electron transfer DMSA DMSB DMSC NUOA NUOB NUOC NUOE NUOF NUOG NUOH NUOI NUOJ NUOK NUOL NUON WRBA YIEF
PWY0-1352 NADH to nitrate electron transfer NARG NARH NARI NARV NARY NARZ NUOA NUOB NUOC NUOE NUOF NUOG NUOH NUOI NUOJ NUOK NUOL NUON WRBA YIEF
PWY0-1353 succinate to cytochrome bd oxidase electron transfer APPB APPC CYDA CYDB SDHA SDHB SDHC SDHD
PWY0-1355 formate to trimethylamine N-oxide electron transfer BISZ FDNG FDNH FDNI FDOG FDOH FDOI TORA TORC YECK
PWY0-1356 formate to dimethyl sulfoxide electron transfer DMSA DMSB DMSC FDNG FDNH FDNI FDOG FDOH FDOI
PWY0-1391 methylthioadenosine degradation PFS
PWY0-1415 superpathway of heme biosynthesis from uroporphyrinogen-III HEMC HEMF HEMG HEMH HEMN
PWY0-162 pyrimidine ribonucleotides de novo biosynthesis CARA CARB NDK PYRB PYRC PYRD PYRE PYRF PYRG PYRH PYRI
PWY0-163 salvage pathways of pyrimidine ribonucleotides CDD CMK CODA NDK UDK UDP UPP
PWY0-166 pyrimidine deoxyribonucleotides de novo biosynthesis DCD DUT NDK NRDA NRDB NRDD NRDE THYA TMK YFAO YGAD
PWY0-181 salvage pathways of pyrimidine deoxyribonucleotides CDD DEOA TDK
PWY0-301 L-ascorbate degradation, anaerobic SGAE SGAH SGAU YJFR
PWY0-321 phenylacetate degradation I (aerobic) B1391 B1392 B1394 B1397 B1398 MAOC YDBO YDBP YDBS YDBU YNBF
PWY0-381 glycerol degradation I GLPA GLPB GLPC GLPD GLPK GLPQ UGPQ
PWY0-41 allantoin degradation IV (anaerobic) YBBX YLBB YLBC
PWY0-42 2-methylcitrate cycle I ACNB ACS PRPB PRPC PRPD
PWY0-43 conversion of succinate to propionate SBM YGFG YGFH
PWY0-44 D-allose degradation RPIB YJCT YJCU
PWY0-461 lysine degradation I CADA LDCC
PWY0-501 lipoate biosynthesis and incorporation I AAS LIPA LIPB
PWY0-521 fructoselysine and psicoselysine degradation YHFN YHFO YHFQ
PWY0-522 lipoate salvage and modification LPLA
PWY0-541 cyclopropane fatty acid (CFA) biosynthesis CFA
PWY0-661 PRPP biosynthesis II DEOB PHNN
PWY0-662 PRPP biosynthesis I PRSA
PWY0-781 aspartate superpathway ARGD ASD ASPC DAPA DAPB DAPD DAPE DAPF LYSA LYSC MALY META METB METC METE METH METK METL NADA NADB NADC NADE THRA THRB THRC YBEN
PWY0-823 arginine degradation III (arginine decarboxylase/agmatinase pathway) ADIA SPEA SPEB
PWY0-845 superpathway of pyridoxal 5'-phosphate biosynthesis and salvage DXS EPD PDXA PDXB PDXH PDXJ PDXY SERC THIJ
PWY0-862 cis-dodecenoyl biosynthesis FABA FABB FABG FABI FABZ
PWY0-881 superpathway of fatty acid biosynthesis I (E. coli) ACCA ACCB FABA FABB FABD FABF FABG FABH FABI FABZ USG
PWY0-901 selenocysteine biosynthesis I (bacteria) SELA SELD SERS
PWY0-981 taurine degradation IV TAUD
PYRIDNUCSAL-PWY NAD salvage pathway I NADE PNCB YBEN YDJB YJAD
PYRIDNUCSYN-PWY NAD biosynthesis I (from aspartate) NADA NADB NADC NADE YBEN
PYRIDOXSYN-PWY pyridoxal 5'-phosphate biosynthesis DXS EPD PDXA PDXB PDXH PDXJ SERC
PYRUVDEHYD-PWY acetyl-CoA biosynthesis (from pyruvate) ACEE ACEF LPDA
PYRUVOX-PWY pyruvate oxidation pathway POXB
RHAMCAT-PWY rhamnose degradation RHAA RHAB RHAD
RIBOKIN-PWY ribose degradation RBSD RBSK
RIBOSYN2-PWY flavin biosynthesis I (bacteria) RIBA RIBB RIBE RIBF RIBH YBAE
SALVADEHYPOX-PWY salvage pathways of adenine, hypoxanthine, and their nucleosides ADD AMN APT B2866 B2868 DEOD GPT GSK HPT YGET
SALVPURINE2-PWY salvage pathways of guanine, xanthine, and their nucleosides DEOD GPT GSK HPT XAPA YGFP
SAM-PWY S-adenosylmethionine biosynthesis METK
SER-GLYSYN-PWY superpathway of serine and glycine biosynthesis I GLYA SERA SERB SERC
SERDEG-PWY L-serine degradation SDAA SDAB TDCB YHAP
SERSYN-PWY serine biosynthesis SERA SERB SERC
SO4ASSIM-PWY sulfate reduction I (assimilatory) CYSC CYSD CYSH CYSI CYSJ CYSN
SORBDEG-PWY sorbitol degradation II SRLD
SULFATE-CYS-PWY superpathway of sulfate assimilation and cysteine biosynthesis CYSC CYSD CYSE CYSH CYSI CYSJ CYSM CYSN CYSZ SERA SERB SERC
TCA TCA cycle ACNA ACNB FUMA FUMB FUMC GLTA ICDA LPDA MDH SDHA SDHB SDHC SDHD SUCA SUCB SUCC SUCD YOJH
TCA-GLYOX-BYPASS superpathway of glyoxylate bypass and TCA ACEA ACEB ACNA ACNB FUMA FUMB FUMC GLTA ICDA LPDA MDH SDHA SDHB SDHC SDHD SUCA SUCB SUCC SUCD YOJH
THIOREDOX-PWY thioredoxin pathway TRXB
THISYN-PWY thiamin biosynthesis I DXS THIC THIE THIF THIG THIH THIJ THIM YCFN YFHO
THRDLCTCAT-PWY threonine degradation III (to methylglyoxal) TDH TYNA
THREOCAT-PWY superpathway of threonine metabolism ACKA ADHC GLDA ILVA ILVB ILVC ILVD ILVE ILVG_1 ILVH ILVI ILVM ILVN KBL MHPF PFLB PTA TDCB TDCD TDCE TDH TYNA YBJU
THREONINE-DEG2-PWY threonine degradation II KBL TDH
THRESYN-PWY threonine biosynthesis ASD ASPC LYSC METL THRA THRB THRC
TREDEGLOW-PWY trehalose degradation I (low osmolarity) GLK TREC
TRESYN-PWY trehalose biosynthesis I OTSA OTSB
TRNA-CHARGING-PWY tRNA charging pathway ALAS ARGS ASNS ASPS CYSS GLNS GLTX GLYQ GLYS HISS ILES LEUS LYSS LYSU METG PHES PHET PROS SERS THRS TRPS TYRS VALS
TRPSYN-PWY tryptophan biosynthesis TRPA TRPB TRPC TRPD TRPE
TRYPDEG-PWY tryptophan degradation II (via pyruvate) TNAA
TYRSYN tyrosine biosynthesis I PHEA TYRA TYRB
UBISYN-PWY ubiquinone-8 biosynthesis (prokaryotic) UBIA UBIB UBIC UBIE UBIG UBIH UBIX YIGC YIGR YLEB
UDPNAGSYN-PWY UDP-N-acetyl-D-glucosamine biosynthesis I GLMS GLMU MRSA
VALSYN-PWY valine biosynthesis ILVB ILVC ILVD ILVE ILVG_1 ILVH ILVI ILVM ILVN
XYLCAT-PWY xylose degradation I XYLA XYLB