# format: sets # version: 1.2 # strain: EcolA # date: 2013/09/23 # comment: BioCyc pathways 1CMET2-PWY formylTHF biosynthesis I FOLA FOLC FOLD GCVH GCVP GCVT GLYA LPDA METF METH PURU THYA YDGB 2PHENDEG-PWY phenylethylamine degradation FEAB TYNA 4AMINOBUTMETAB-PWY 4-aminobutyrate degradation I B1525 GABD GABT GOAG ACETATEUTIL-PWY superpathway of acetate utilization and formation ACKA ACS PTA ACETOACETATE-DEG-PWY acetoacetate degradation (to acetyl CoA) ATOA ATOB ATOD ALADEG-PWY alanine degradation I ALR DADA DADX ALANINE-SYN2-PWY alanine biosynthesis II ILVE ALANINE-VALINESYN-PWY alanine biosynthesis I ALR AVTA DADX ILVE ALKANEMONOX-PWY two-component alkanesulfonate monooxygenase YCBN YCBP ALL-CHORISMATE-PWY superpathway of chorismate AROA AROB AROC AROD AROE AROF AROG AROH AROK AROL ASPC ENTA ENTB ENTC ENTD ENTE ENTF FOLA FOLC FOLD FOLE FOLK FOLP MENA MENB MENC MEND MENE MENF NTPA PABA PABB PABC PHEA PURN TRPA TRPB TRPC TRPD TRPE TYRA TYRB UBIA UBIB UBIC UBIE UBIG UBIH UBIX YDGB YDIB YFBB YGIG YIGC YIGR YLEB AMMASSIM-PWY superpathway of glutamate biosynthesis GLNA GLTB GLTD ANARESP1-PWY respiration (anaerobic) ACEE ACEF ACNB ENO FDHF FRDA FRDB FRDC FRDD FUMA FUMB FUMC GLTA HYCB HYCC HYCD HYCE HYCF HYCG ICDA LPDA MDH PFLB PPC PYKA PYKF TDCE ARABCAT-PWY L-arabinose degradation I ARAA ARAB ARAD ARCB-PWY ArcAB Two-Component Signal Transduction System B2340 ARG+POLYAMINE-SYN superpathway of arginine and polyamine biosynthesis ARGA ARGB ARGC ARGD ARGE ARGF ARGG ARGH ARGI CADA CARA CARB LDCC SPEA SPEB SPEC SPED SPEE ARGDEG-PWY superpathway of arginine, putrescine, and 4-aminobutyrate degradation ADIA ALDH B1297 B1444 B1525 GABD GABT GOAG ORDL SPEB YCJL YGJG ARGSYN-PWY arginine biosynthesis I ARGA ARGB ARGC ARGD ARGE ARGF ARGG ARGH ARGI CARA CARB ARO-PWY chorismate biosynthesis I AROA AROB AROC AROD AROE AROF AROG AROH AROK AROL YDIB ASPARAGINE-BIOSYNTHESIS asparagine biosynthesis I ASNB ASPARAGINESYN-PWY asparagine biosynthesis II ASNA ASNB ASPARTATESYN-PWY aspartate biosynthesis ASPC ASPASN-PWY superpathway of aspartate and asparagine biosynthesis; interconversion of aspartate and asparagine ANSA ANSB ASNA ASNB ASPA ASPC YBIK AST-PWY arginine degradation II (AST pathway) B1745 B1746 B1747 CSTC YDJS BETSYN-PWY glycine betaine biosynthesis I (Gram-negative bacteria) BETA BETB BGALACT-PWY lactose degradation III LACZ BIOTIN-SYNTHESIS-PWY biotin biosynthesis I BIOA BIOB BIOD BIOF BRANCHED-CHAIN-AA-SYN-PWY superpathway of leucine, valine, and isoleucine biosynthesis ILVA ILVB ILVC ILVD ILVE ILVG_1 ILVH ILVI ILVM ILVN LEUA LEUB LEUC LEUD TYRB BSUBPOLYAMSYN-PWY spermidine biosynthesis SPED SPEE CARNMET-PWY carnitine degradation I CAIA CAIB CAIC CAID CHE-PWY Chemotactic Signal Transduction System CHEB CHER COA-PWY coenzyme A biosynthesis COAA DFP KDTB YACE COBALSYN-PWY adenosylcobalamin salvage from cobinamide I BTUR COBS COBT COBU PHPB COLANSYN-PWY colanic acid building blocks biosynthesis CPSB CPSG GALE GALF GALK GALT GALU GMD MANA PGI UGD WCAG COMPLETE-ARO-PWY superpathway of phenylalanine, tyrosine, and tryptophan biosynthesis AROA AROB AROC AROD AROE AROF AROG AROH AROK AROL ASPC PHEA TRPA TRPB TRPC TRPD TRPE TYRA TYRB YDIB CYANCAT-PWY cyanate degradation CYNS CYNT CYSTSYN-PWY cysteine biosynthesis I CYSE CYSM CYSZ DAPLYSINESYN-PWY lysine biosynthesis I ARGD ASD DAPA DAPB DAPD DAPE DAPF LYSA LYSC DARABCATK12-PWY D-arabinose degradation I ALDA FUCA FUCI FUCK DENOVOPURINE2-PWY purine nucleotides de novo biosynthesis I ADK GMK GUAA GUAB NDK NRDA NRDB NRDD NRDE PURA PURB PURC PURD PURE PURH PURK PURL PURM PURT YGAD DETOX1-PWY superoxide radicals degradation KATE KATG SODA SODB SODC DTDPRHAMSYN-PWY dTDP-L-rhamnose biosynthesis I RFBA RFBB RFBC RFBD ECASYN-PWY enterobacterial common antigen biosynthesis RFE RFFG RFFH WECB WECC WECD WECE WECF WECG ENTBACSYN-PWY enterobactin biosynthesis ENTA ENTB ENTC ENTD ENTE ENTF ENTNER-DOUDOROFF-PWY Entner-Doudoroff pathway I EDA EDD ETOH-ACETYLCOA-ANA-PWY ethanol degradation ADHC ADHP MHPF FAO-PWY fatty acid β-oxidation I AIDB B1695 B2341 B2342 FADA FADB FADD MAOC UBIB YAFH YDID FASYN-ELONG-PWY fatty acid elongation -- saturated FABA FABB FABF FABG FABI FABZ FASYN-INITIAL-PWY superpathway of fatty acid biosynthesis initiation (E. coli) ACCA ACCB FABB FABD FABF FABG FABH USG FERMENTATION-PWY mixed acid fermentation ACKA ACNB ADHC ADHP FDHF FRDA FRDB FRDC FRDD FUMA FUMB FUMC GLTA HYCB HYCC HYCD HYCE HYCF HYCG ICDA LDHA MDH PFLB PPC PTA PYKA PYKF TDCE FOLSYN-PWY tetrahydrofolate biosynthesis FOLA FOLC FOLD FOLE FOLK FOLP NTPA PABA PABB PABC PURN YDGB YGIG FUC-RHAMCAT-PWY superpathway of fucose and rhamnose degradation ALDA FUCA FUCI FUCK FUCO LLDD RHAA RHAB RHAD FUCCAT-PWY fucose degradation FUCA FUCI FUCK GALACT-GLUCUROCAT-PWY superpathway of hexuronide and hexuronate degradation KDGK UIDA UXAA UXAB UXAC UXUA UXUB GALACTARDEG-PWY D-galactarate degradation YHAD YHAE YHAF YHAG GALACTCAT-PWY D-galactonate degradation DGOA DGOK SRLA GALACTITOLCAT-PWY galactitol degradation AGAY AGAZ GATD GATY GATZ PFKB GALACTMETAB-PWY galactose degradation I (Leloir pathway) GALE GALF GALK GALM GALT GALU GALACTUROCAT-PWY D-galacturonate degradation KDGK UXAA UXAB UXAC GLCMANNANAUT-PWY superpathway of N-acetylglucosamine, N-acetylmannosamine and N-acetylneuraminate degradation NAGA NAGB NANA YHCI YHCJ GLNSYN-PWY glutamine biosynthesis I GLNA GLUAMCAT-PWY N-acetylglucosamine degradation NAGA NAGB GLUCARDEG-PWY D-glucarate degradation YGCX YHAD YHAE YHAF GLUCARGALACTSUPER-PWY superpathway of D-glucarate and D-galactarate degradation YGCX YHAD YHAE YHAF YHAG GLUCONEO-PWY gluconeogenesis I B2097 B2463 ENO FBA FBP GAPA GLPX GPMA GPMB MDH PCKA PGI PGK PPC PPSA SFCA YBHA YGGF YIBO GLUCONSUPER-PWY superpathway of gluconate degradation EDA EDD GND GNTK IDNK RPIA RPIB GLUCOSE1PMETAB-PWY glucose and glucose-1-phosphate degradation AGP ASD B0822 GCD GLK PGM YIDA YIGL YIHX GLUCUROCAT-PWY β-D-glucuronide and D-glucuronate degradation KDGK UIDA UXAC UXUA UXUB GLUT-REDOX-PWY glutathione redox reactions II GOR GLUTAMINDEG-PWY glutamine degradation I YBAS YNEH GLUTATHIONESYN-PWY glutathione biosynthesis GSHA GSHB GLUTDEG-PWY glutamate degradation II ASPA ASPC GLUTORN-PWY ornithine biosynthesis ARGA ARGB ARGC ARGD ARGE CSTC GLUTSYN-PWY glutamate biosynthesis I GLTB GLTD GLUTSYNIII-PWY glutamate biosynthesis III GDHA GLYCEROLMETAB-PWY glycerol degradation V GLDA GLYCLEAV-PWY glycine cleavage complex GCVP GCVT LPDA GLYCOCAT-PWY glycogen degradation I GLGP GLGX GLK MALP MALQ MALZ PGM GLYCOGENSYNTH-PWY glycogen biosynthesis I (from ADP-D-Glucose) GLGA GLGB GLGC GLYCOL-GLYOXDEG-PWY superpathway of glycol metabolism and degradation ALDA FUCO GCL GLCB GLCD GLCF YBBQ YBBZ GLYCOLATEMET-PWY glycolate and glyoxylate degradation I GCL GLCD GLCF YBBQ YBBZ GLYCOLYSIS glycolysis I B2097 ENO FBA FBP GAPA GLPX GPMA GPMB PFKA PFKB PGI PGK PPSA PYKA PYKF TPIA YBHA YGGF YIBO GLYCOLYSIS-E-D superpathway of glycolysis and Entner-Doudoroff B2097 EDA EDD ENO FBA FBP GAPA GLPX GPMA GPMB PFKA PFKB PGI PGK PPSA PYKA PYKF TPIA YBHA YBHE YGGF YIBO ZWF GLYCOLYSIS-TCA-GLYOX-BYPASS superpathway of glycolysis, pyruvate dehydrogenase, TCA, and glyoxylate bypass ACEA ACEB ACEE ACEF ACNA ACNB B2097 ENO FBA FBP FUMA FUMB FUMC GAPA GLPX GLTA GPMA GPMB ICDA LPDA MDH PFKA PFKB PGI PGK PPSA PYKA PYKF SDHA SDHB SDHC SDHD SUCA SUCB SUCC SUCD TPIA YBHA YGGF YIBO YOJH GLYOXDEG-PWY glycolate and glyoxylate degradation II GLCB GLCD GLCF GLYOXYLATE-BYPASS glyoxylate cycle ACEA ACEB ACNA ACNB GLTA MDH GLYSYN-PWY glycine biosynthesis I GLYA HCAMHPDEG-PWY 3-phenylpropionate and 3-(3-hydroxyphenyl)propionate degradation to 2-oxopent-4-enoate HCAA1 HCAA2 HCAB HCAC HCAD MHPA MHPB MHPC HEME-BIOSYNTHESIS-II heme biosynthesis from uroporphyrinogen-III I HEMC HEMF HEMG HEMH HEMESYN2-PWY heme biosynthesis from uroporphyrinogen-III II HEMC HEMG HEMH HEMN HEXITOLDEGSUPER-PWY superpathway of hexitol degradation MTLD SRLD HISTSYN-PWY histidine biosynthesis HISA HISB HISC HISD HISF HISG HISH HISI HOMOSER-METSYN-PWY methionine biosynthesis I MALY META METB METC METE METH HOMOSER-THRESYN-PWY threonine biosynthesis from homoserine THRB THRC HOMOSERSYN-PWY homoserine biosynthesis ASD LYSC METL THRA IDNCAT-PWY L-idonate degradation IDND IDNK IDNO ILEUSYN-PWY isoleucine biosynthesis I (from threonine) ILVA ILVB ILVC ILVD ILVE ILVG_1 ILVH ILVI ILVM ILVN KDO-LIPASYN-PWY KDO2-lipid A biosynthesis I HTRB MSBB KDO-NAGLIPASYN-PWY superpathway of KDO2-lipid A biosynthesis DDG GUTQ HLPA HTRB KDSA KDSB KDTA LPXA LPXB LPXC MSBB YBBF YCAH YRBH YRBI KDOSYN-PWY KDO transfer to lipid IVA KDTA KETOGLUCONMET-PWY ketogluconate metabolism IDND IDNK IDNO YAFB YIAE YQHE LCYSDEG-PWY L-cysteine degradation II METC TNAA LEUSYN-PWY leucine biosynthesis ILVE LEUA LEUB LEUC LEUD TYRB LIPA-CORESYN-PWY Lipid A-core biosynthesis RFAB RFAC RFAF RFAG RFAI RFAJ RFAK RFAP RFAQ RFAY LPSSYN-PWY superpathway of lipopolysaccharide biosynthesis GUTQ HLPA HTRB KDSA KDSB KDTA LPXA LPXB LPXC MSBB RFAB RFAC RFAF RFAG RFAI RFAJ RFAK RFAP RFAQ RFAY YBBF YCAH YRBH YRBI LYXMET-PWY L-lyxose degradation ARAD LYXK RHAA SGBE SGBU MANNCAT-PWY D-mannose degradation MANA MANNIDEG-PWY mannitol degradation I MTLD MENAQUINONESYN-PWY menaquinone-8 biosynthesis UBIE MET-SAM-PWY methionine and methyl-donor-molecule biosynthesis ASD MALY META METB METC METE METH METK METL METHGLYUT-PWY superpathway of methylglyoxal degradation ALDA B1781 B3001 DLD GLDA GLOA GLOB LLDD YAFB YEIG YQHE METSYN-PWY homoserine and methionine biosynthesis ASD MALY META METB METC METE METH METL NADPHOS-DEPHOS-PWY NAD phosphorylation and dephosphorylation PNTA PNTB YFJB NAGLIPASYN-PWY lipid-A-precursor biosynthesis HLPA LPXA LPXB LPXC YBBF YCAH NONMEVIPP-PWY methylerythritol phosphate pathway B2889 DXS GCPE LYTB YAEM YCHB YGBB YGBP NONOXIPENT-PWY pentose phosphate pathway (non-oxidative branch) RPE RPIA RPIB TALA TALB TKTA TKTB NRI-PWY Nitrogen Regulation Two-Component System GLNA GLND GLNE OANTIGEN-PWY O-antigen biosynthesis (E. coli) GLF GLMS GLMU MRSA RFBA RFBB RFBC RFBD ORNARGDEG-PWY superpathway of arginine and ornithine degradation ADIA ALDH B1297 B1444 B1525 GABD GABT GOAG ORDL SPEB SPEF YCJL YGJG ORNDEG-PWY superpathway of ornithine degradation ALDH B1297 B1444 ORDL SPEF YCJL YGJG OXIDATIVEPENT-PWY pentose phosphate pathway (oxidative branch) GND YBHE ZWF P2-PWY 2'-(5'-phosphoribosyl)-3'-dephospho-CoA biosynthesis I (citrate lyase) CITG YBDU P4-PWY superpathway of lysine, threonine and methionine biosynthesis I ARGD ASD ASPC DAPA DAPB DAPD DAPE DAPF LYSA LYSC MALY META METB METC METE METH METL THRA THRB THRC PANTO-PWY pantothenate biosynthesis I APBA PANB PANC PANTOSYN-PWY pantothenate and coenzyme A biosynthesis I APBA COAA DFP KDTB PANB PANC PAND YACE PENTOSE-P-PWY pentose phosphate pathway GND RPE RPIA RPIB TALA TALB TKTA TKTB YBHE ZWF PEPTIDOGLYCANSYN-PWY peptidoglycan biosynthesis III DDLA DDLB MRAY MURA MURB MURC MURD MURE MURF MURG MURI PHESYN phenylalanine biosynthesis I ASPC PHEA TYRA TYRB PHOSLIPSYN-PWY phospholipid biosynthesis I CDSA CLS GPSA PGPA PGPB PGSA PLSB PLSC PSD PSSA YBHO PLPSAL-PWY pyridoxal 5'-phosphate salvage pathway PDXH PDXY THIJ POLYAMSYN-PWY superpathway of polyamine biosynthesis I CADA LDCC SPEA SPEB SPEC SPED SPEE POLYISOPRENSYN-PWY polyisoprenoid biosynthesis (E. coli) B2889 ISPA ISPB YAES PPGPPMET-PWY ppGpp biosynthesis GPPA GPT RELA SPOT PROPIONMET-PWY methylmalonyl pathway SBM PROSYN-PWY proline biosynthesis I PROA PROB PROC PROUT-PWY proline degradation I PUTA PRPP-PWY superpathway of histidine, purine, and pyrimidine biosynthesis ADK CARA CARB DEOB GMK GUAA GUAB HISA HISB HISC HISD HISF HISG HISH HISI NDK NRDA NRDB NRDD NRDE PHNN PRSA PURA PURB PURC PURD PURE PURH PURK PURL PURM PURT PYRB PYRC PYRD PYRE PYRF PYRG PYRH PYRI YGAD PUTDEG-PWY putrescine degradation I B1444 YGJG PWY-1269 CMP-KDO biosynthesis I GUTQ KDSA KDSB YRBH YRBI PWY-1801 formaldehyde oxidation II (glutathione-dependent) ADHC YAIM YEIG PWY-2161 folate polyglutamylation I FOLC GLYA PWY-40 putrescine biosynthesis I SPEA SPEB PWY-4381 fatty acid biosynthesis initiation I ACCA ACCB FABD FABG FABH USG PWY-46 putrescine biosynthesis III SPEC PWY-5084 2-ketoglutarate dehydrogenase complex LPDA SUCA SUCB PWY-5123 trans,trans-farnesyl diphosphate biosynthesis B2889 ISPA PWY-5155 β-alanine biosynthesis IV PAND PWY-5162 2-oxopentenoate degradation MHPD MHPE MHPF PWY-5188 tetrapyrrole biosynthesis I GLTX HEMA HEMB HEMC HEMD HEML PWY-5194 siroheme biosynthesis CYSG PWY-5340 sulfate activation for sulfonation CYSC CYSD CYSN PWY-5386 methylglyoxal degradation I DLD GLOA GLOB YEIG PWY-5436 threonine degradation IV ADHC MHPF YBJU PWY-5437 threonine degradation I ACKA PFLB PTA TDCB TDCD TDCE PWY-5448 aminopropanol biosynthesis GLDA TDH PWY-5453 methylglyoxal degradation III B1781 B3001 GLDA YAFB YQHE PWY-5459 methylglyoxal degradation IV ALDA LLDD PWY-5659 GDP-mannose biosynthesis CPSB CPSG MANA PGI PWY-5667 CDP-diacylglycerol biosynthesis I CDSA GPSA PLSB PLSC PWY-5668 cardiolipin biosynthesis I CLS PGPA PGPB PGSA YBHO PWY-5669 phosphatidylethanolamine biosynthesis I PSD PSSA PWY-5686 uridine-5'-phosphate biosynthesis CARA CARB PYRB PYRC PYRD PYRE PYRF PYRI PWY-5687 pyrimidine ribonucleotides interconversion NDK PYRG PYRH PWY-5698 allantoin degradation to ureidoglycolate II (ammonia producing) YBBX YLBB PWY-5783 octaprenyl diphosphate biosynthesis ISPB PWY-5785 di-trans,poly-cis-undecaprenyl diphosphate biosynthesis YAES PWY-5837 1,4-dihydroxy-2-naphthoate biosynthesis I MENB MENC MEND MENE MENF YFBB PWY-5838 superpathway of menaquinone-8 biosynthesis I ISPB MENA MENB MENC MEND MENE MENF UBIE YFBB PWY-5852 demethylmenaquinone-8 biosynthesis II MENA PWY-5901 2,3-dihydroxybenzoate biosynthesis ENTA ENTB ENTC PWY-5965 fatty acid biosynthesis initiation III FABB FABF PWY-5966 fatty acid biosynthesis initiation II FABB FABF FABH PWY-5971 palmitate biosynthesis II (bacteria and plants) FABB FABG FABZ PWY-5973 cis-vaccenate biosynthesis FABA FABF FABG FABZ PWY-6071 superpathway of phenylethylamine degradation B1391 B1392 B1394 B1397 B1398 FEAB MAOC TYNA YDBO YDBP YDBS YDBU YNBF PWY-6121 5-aminoimidazole ribonucleotide biosynthesis I PURC PURD PURL PURM PURN PWY-6122 5-aminoimidazole ribonucleotide biosynthesis II PURC PURD PURL PURM PURT PWY-6123 inosine-5'-phosphate biosynthesis I PURB PURC PURE PURH PURK PWY-6125 guanosine nucleotides de novo biosynthesis GMK GUAA GUAB NDK NRDA NRDB NRDD NRDE YGAD PWY-6126 adenosine nucleotides de novo biosynthesis ADK NDK NRDA NRDB NRDD NRDE PURA PURB YGAD PWY-6151 S-adenosyl-L-methionine cycle I METE METK PFS YGAG PWY-6153 autoinducer AI-2 biosynthesis I PFS YGAG PWY-6277 superpathway of 5-aminoimidazole ribonucleotide biosynthesis PURC PURD PURL PURM PURN PURT PWY-6282 palmitoleate biosynthesis I FABB FABG FABI FABZ TESA PWY-6284 superpathway of unsaturated fatty acids biosynthesis (E. coli) FABA FABB FABF FABG FABI FABZ TESA PWY-66 GDP-L-fucose biosynthesis I (from GDP-D-mannose) GMD WCAG PWY-901 methylglyoxal degradation II DLD PWY0-1021 alanine biosynthesis III YFHO PWY0-1061 superpathway of alanine biosynthesis ALR AVTA DADX ILVE YFHO PWY0-1182 trehalose degradation II (trehalase) GLK TREA TREF PWY0-1221 putrescine degradation II ALDH B1297 ORDL YCJL PWY0-1241 ADP-L-glycero-β-D-manno-heptose biosynthesis B3052 GMHA RFAD YAED PWY0-1261 1,6-anhydro-N-acetylmuramic acid recycling B1640 YFEU PWY0-1264 biotin-carboxyl carrier protein ACCA BIRA FABG USG PWY0-1275 lipoate biosynthesis and incorporation II LIPA LPLA PWY0-1277 3-phenylpropionate and 3-(3-hydroxyphenyl)propionate degradation HCAA1 HCAA2 HCAB HCAC HCAD MHPA MHPB MHPC MHPD MHPE MHPF PWY0-1280 ethylene glycol degradation ALDA FUCO PWY0-1295 degradation of pyrimidine ribonucleosides CDD DEOB UDP PWY0-1296 degradation of purine ribonucleosides ADD DEOB DEOD XAPA PWY0-1297 purine deoxyribonucleosides degradation ADD ADHC DEOB DEOC DEOD MHPF PWY0-1298 pyrimidine deoxyribonucleosides degradation ADHC CDD DEOA DEOB DEOC MHPF PWY0-1299 arginine dependent acid resistance ADIA PWY0-1300 2-O-α-mannosyl-D-glycerate degradation YBGG YHAD PWY0-1301 melibiose degradation MELA PWY0-1303 aminopropylcadaverine biosynthesis CADA LDCC SPEE PWY0-1305 glutamate dependent acid resistance GADA GADB PWY0-1306 L-galactonate degradation YJJN PWY0-1309 chitobiose degradation CELF YCFX PWY0-1312 acetate formation from acetyl-CoA I ACKA PTA PWY0-1313 acetate conversion to acetyl-CoA ACS PWY0-1314 fructose degradation FRUK PWY0-1315 L-lactaldehyde degradation (anaerobic) FUCO PWY0-1317 L-lactaldehyde degradation (aerobic) ALDA LLDD PWY0-1319 CDP-diacylglycerol biosynthesis II CDSA GPSA PLSB PLSC PWY0-1321 formate to nitrate electron transfer FDNG FDNH FDNI FDOG FDOH FDOI NARG NARH NARI NARV NARY NARZ PWY0-1324 N-acetylneuraminate and N-acetylmannosamine degradation NANA YHCI YHCJ PWY0-1325 superpathway of asparagine biosynthesis ASNA ASNB PWY0-1329 succinate to cytochrome bo oxidase electron transfer CYOA CYOB CYOC CYOD SDHA SDHB SDHC SDHD PWY0-1334 NADH to cytochrome bd oxidase electron transfer APPB APPC CYDA CYDB NUOA NUOB NUOC NUOE NUOF NUOG NUOH NUOI NUOJ NUOK NUOL NUON WRBA YIEF PWY0-1335 NADH to cytochrome bo oxidase electron transfer CYOA CYOB CYOC CYOD NUOA NUOB NUOC NUOE NUOF NUOG NUOH NUOI NUOJ NUOK NUOL NUON WRBA YIEF PWY0-1336 NADH to fumarate electron transfer FRDA FRDB FRDC FRDD NUOA NUOB NUOC NUOE NUOF NUOG NUOH NUOI NUOJ NUOK NUOL NUON WRBA YIEF PWY0-1337 oleate β-oxidation FADB YBAW PWY0-1338 biosynthesis of 4-amino-4-deoxy-L-arabinose-modified lipid A B2253 B2254 B2255 PWY0-1347 NADH to trimethylamine N-oxide electron transfer BISZ NUOA NUOB NUOC NUOE NUOF NUOG NUOH NUOI NUOJ NUOK NUOL NUON TORA TORC WRBA YECK YIEF PWY0-1348 NADH to dimethyl sulfoxide electron transfer DMSA DMSB DMSC NUOA NUOB NUOC NUOE NUOF NUOG NUOH NUOI NUOJ NUOK NUOL NUON WRBA YIEF PWY0-1352 NADH to nitrate electron transfer NARG NARH NARI NARV NARY NARZ NUOA NUOB NUOC NUOE NUOF NUOG NUOH NUOI NUOJ NUOK NUOL NUON WRBA YIEF PWY0-1353 succinate to cytochrome bd oxidase electron transfer APPB APPC CYDA CYDB SDHA SDHB SDHC SDHD PWY0-1355 formate to trimethylamine N-oxide electron transfer BISZ FDNG FDNH FDNI FDOG FDOH FDOI TORA TORC YECK PWY0-1356 formate to dimethyl sulfoxide electron transfer DMSA DMSB DMSC FDNG FDNH FDNI FDOG FDOH FDOI PWY0-1391 methylthioadenosine degradation PFS PWY0-1415 superpathway of heme biosynthesis from uroporphyrinogen-III HEMC HEMF HEMG HEMH HEMN PWY0-162 pyrimidine ribonucleotides de novo biosynthesis CARA CARB NDK PYRB PYRC PYRD PYRE PYRF PYRG PYRH PYRI PWY0-163 salvage pathways of pyrimidine ribonucleotides CDD CMK CODA NDK UDK UDP UPP PWY0-166 pyrimidine deoxyribonucleotides de novo biosynthesis DCD DUT NDK NRDA NRDB NRDD NRDE THYA TMK YFAO YGAD PWY0-181 salvage pathways of pyrimidine deoxyribonucleotides CDD DEOA TDK PWY0-301 L-ascorbate degradation, anaerobic SGAE SGAH SGAU YJFR PWY0-321 phenylacetate degradation I (aerobic) B1391 B1392 B1394 B1397 B1398 MAOC YDBO YDBP YDBS YDBU YNBF PWY0-381 glycerol degradation I GLPA GLPB GLPC GLPD GLPK GLPQ UGPQ PWY0-41 allantoin degradation IV (anaerobic) YBBX YLBB YLBC PWY0-42 2-methylcitrate cycle I ACNB ACS PRPB PRPC PRPD PWY0-43 conversion of succinate to propionate SBM YGFG YGFH PWY0-44 D-allose degradation RPIB YJCT YJCU PWY0-461 lysine degradation I CADA LDCC PWY0-501 lipoate biosynthesis and incorporation I AAS LIPA LIPB PWY0-521 fructoselysine and psicoselysine degradation YHFN YHFO YHFQ PWY0-522 lipoate salvage and modification LPLA PWY0-541 cyclopropane fatty acid (CFA) biosynthesis CFA PWY0-661 PRPP biosynthesis II DEOB PHNN PWY0-662 PRPP biosynthesis I PRSA PWY0-781 aspartate superpathway ARGD ASD ASPC DAPA DAPB DAPD DAPE DAPF LYSA LYSC MALY META METB METC METE METH METK METL NADA NADB NADC NADE THRA THRB THRC YBEN PWY0-823 arginine degradation III (arginine decarboxylase/agmatinase pathway) ADIA SPEA SPEB PWY0-845 superpathway of pyridoxal 5'-phosphate biosynthesis and salvage DXS EPD PDXA PDXB PDXH PDXJ PDXY SERC THIJ PWY0-862 cis-dodecenoyl biosynthesis FABA FABB FABG FABI FABZ PWY0-881 superpathway of fatty acid biosynthesis I (E. coli) ACCA ACCB FABA FABB FABD FABF FABG FABH FABI FABZ USG PWY0-901 selenocysteine biosynthesis I (bacteria) SELA SELD SERS PWY0-981 taurine degradation IV TAUD PYRIDNUCSAL-PWY NAD salvage pathway I NADE PNCB YBEN YDJB YJAD PYRIDNUCSYN-PWY NAD biosynthesis I (from aspartate) NADA NADB NADC NADE YBEN PYRIDOXSYN-PWY pyridoxal 5'-phosphate biosynthesis DXS EPD PDXA PDXB PDXH PDXJ SERC PYRUVDEHYD-PWY acetyl-CoA biosynthesis (from pyruvate) ACEE ACEF LPDA PYRUVOX-PWY pyruvate oxidation pathway POXB RHAMCAT-PWY rhamnose degradation RHAA RHAB RHAD RIBOKIN-PWY ribose degradation RBSD RBSK RIBOSYN2-PWY flavin biosynthesis I (bacteria) RIBA RIBB RIBE RIBF RIBH YBAE SALVADEHYPOX-PWY salvage pathways of adenine, hypoxanthine, and their nucleosides ADD AMN APT B2866 B2868 DEOD GPT GSK HPT YGET SALVPURINE2-PWY salvage pathways of guanine, xanthine, and their nucleosides DEOD GPT GSK HPT XAPA YGFP SAM-PWY S-adenosylmethionine biosynthesis METK SER-GLYSYN-PWY superpathway of serine and glycine biosynthesis I GLYA SERA SERB SERC SERDEG-PWY L-serine degradation SDAA SDAB TDCB YHAP SERSYN-PWY serine biosynthesis SERA SERB SERC SO4ASSIM-PWY sulfate reduction I (assimilatory) CYSC CYSD CYSH CYSI CYSJ CYSN SORBDEG-PWY sorbitol degradation II SRLD SULFATE-CYS-PWY superpathway of sulfate assimilation and cysteine biosynthesis CYSC CYSD CYSE CYSH CYSI CYSJ CYSM CYSN CYSZ SERA SERB SERC TCA TCA cycle ACNA ACNB FUMA FUMB FUMC GLTA ICDA LPDA MDH SDHA SDHB SDHC SDHD SUCA SUCB SUCC SUCD YOJH TCA-GLYOX-BYPASS superpathway of glyoxylate bypass and TCA ACEA ACEB ACNA ACNB FUMA FUMB FUMC GLTA ICDA LPDA MDH SDHA SDHB SDHC SDHD SUCA SUCB SUCC SUCD YOJH THIOREDOX-PWY thioredoxin pathway TRXB THISYN-PWY thiamin biosynthesis I DXS THIC THIE THIF THIG THIH THIJ THIM YCFN YFHO THRDLCTCAT-PWY threonine degradation III (to methylglyoxal) TDH TYNA THREOCAT-PWY superpathway of threonine metabolism ACKA ADHC GLDA ILVA ILVB ILVC ILVD ILVE ILVG_1 ILVH ILVI ILVM ILVN KBL MHPF PFLB PTA TDCB TDCD TDCE TDH TYNA YBJU THREONINE-DEG2-PWY threonine degradation II KBL TDH THRESYN-PWY threonine biosynthesis ASD ASPC LYSC METL THRA THRB THRC TREDEGLOW-PWY trehalose degradation I (low osmolarity) GLK TREC TRESYN-PWY trehalose biosynthesis I OTSA OTSB TRNA-CHARGING-PWY tRNA charging pathway ALAS ARGS ASNS ASPS CYSS GLNS GLTX GLYQ GLYS HISS ILES LEUS LYSS LYSU METG PHES PHET PROS SERS THRS TRPS TYRS VALS TRPSYN-PWY tryptophan biosynthesis TRPA TRPB TRPC TRPD TRPE TRYPDEG-PWY tryptophan degradation II (via pyruvate) TNAA TYRSYN tyrosine biosynthesis I PHEA TYRA TYRB UBISYN-PWY ubiquinone-8 biosynthesis (prokaryotic) UBIA UBIB UBIC UBIE UBIG UBIH UBIX YIGC YIGR YLEB UDPNAGSYN-PWY UDP-N-acetyl-D-glucosamine biosynthesis I GLMS GLMU MRSA VALSYN-PWY valine biosynthesis ILVB ILVC ILVD ILVE ILVG_1 ILVH ILVI ILVM ILVN XYLCAT-PWY xylose degradation I XYLA XYLB