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M2BBS - IDH - Revision history
2024-03-28T09:05:40Z
Revision history for this page on the wiki
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Barriot: /* Modélisation, représentation et construction d'une base de connaissances sur E. coli puis exploitation */
2021-08-27T15:07:21Z
<p><span class="autocomment">Modélisation, représentation et construction d'une base de connaissances sur E. coli puis exploitation</span></p>
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<td colspan='2' style="background-color: white; color:black;">Revision as of 15:07, 27 August 2021</td>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>* [[Media:M2BBS - Integration de Donnees Heterogenes - NoSQL.pdf|Masses de données non structurées]]</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>* [[Media:M2BBS - Integration de Donnees Heterogenes - NoSQL.pdf|Masses de données non structurées]]</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>* Prise en main de Neo4j et intégration des données sur le génome d'''E. coli'' : [https://silico<del class="diffchange diffchange-inline">/</del>biotoul.fr/enseignement/m2bbs/idh/Ecoli.knowledge.base.html Ecoli.knowledge.base.html]</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>* Prise en main de Neo4j et intégration des données sur le génome d'''E. coli'' : [https://silico<ins class="diffchange diffchange-inline">.</ins>biotoul.fr/enseignement/m2bbs/idh/Ecoli.knowledge.base.html Ecoli.knowledge.base.html]</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>** Intégration de données d'expression </div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>** Intégration de données d'expression </div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>** Intégration de données d'interaction protéine-protéine</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>** Intégration de données d'interaction protéine-protéine</div></td></tr>
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Barriot
http://silico.biotoul.fr/site/index.php?title=M2BBS_-_IDH&diff=7458&oldid=prev
Barriot: /* Modélisation, représentation et construction d'une base de connaissances sur E. coli puis exploitation */
2020-10-16T05:48:15Z
<p><span class="autocomment">Modélisation, représentation et construction d'une base de connaissances sur E. coli puis exploitation</span></p>
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<td colspan='2' style="background-color: white; color:black;">Revision as of 05:48, 16 October 2020</td>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>** Intégration de données d'interaction protéine-protéine</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>** Intégration de données d'interaction protéine-protéine</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>** Intégration de données phylogénomiques</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>** Intégration de données phylogénomiques</div></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>** Gènes co-exprimés et interactions protéiques et lien <del class="diffchange diffchange-inline">phylogénomique</del></div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>** Gènes co-exprimés et interactions protéiques et lien <ins class="diffchange diffchange-inline">de conservation du contexte génomique</ins></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>* [[Media:M2BBS - Integration de Donnees Heterogenes - Enrichissement.pdf|Recherche de caractéristiques sur-représentées]]</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>* [[Media:M2BBS - Integration de Donnees Heterogenes - Enrichissement.pdf|Recherche de caractéristiques sur-représentées]]</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>** Intégration de données d'annotation et recherche d'annotations sur-représentées chez les gènes/protéines partageant un lien de coexpression/interaction/phylogénomique</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>** Intégration de données d'annotation et recherche d'annotations sur-représentées chez les gènes/protéines partageant un lien de coexpression/interaction/phylogénomique</div></td></tr>
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Barriot
http://silico.biotoul.fr/site/index.php?title=M2BBS_-_IDH&diff=7450&oldid=prev
Barriot at 17:23, 14 October 2020
2020-10-14T17:23:25Z
<p></p>
<a href="http://silico.biotoul.fr/site/index.php?title=M2BBS_-_IDH&diff=7450&oldid=7448">Show changes</a>
Barriot
http://silico.biotoul.fr/site/index.php?title=M2BBS_-_IDH&diff=7448&oldid=prev
Barriot: /* Analyses préliminaires sur les données d'E. coli */
2020-10-14T17:21:19Z
<p><span class="autocomment">Analyses préliminaires sur les données d'E. coli</span></p>
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<td colspan='2' style="background-color: white; color:black;">Revision as of 17:21, 14 October 2020</td>
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<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>= Analyses préliminaires sur les données d'''E. coli'' = </div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>= <ins class="diffchange diffchange-inline">Introduction et présentation des différentes approches d'intégration =</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div> </div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline">Durée : 1/2 journée</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div> </div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline">* [[Media:M2BBS - Integration de Donnees Heterogenes - Generalites.pdf|Approches]] et généralités</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div> </div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline">* </ins>Analyses préliminaires sur les données d'''E. coli'' <ins class="diffchange diffchange-inline">: [https://silico.biotoul.fr/enseignement/m2bbs/idh/ppi.vs.coexp.html ppi.vs.coexp.html]</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div> </div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>= <ins class="diffchange diffchange-inline">Modélisation, représentation et construction d'une base de connaissances sur ''E. coli'' puis exploitation =</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div> </div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline">Durée : 1 journée</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div> </div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline">* [[Media:M2BBS - Integration de Donnees Heterogenes - NoSQL.pdf|Masses de données non structurées]]</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div> </div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline">* Prise en main de Neo4j et intégration des données sur le génome d'''E. coli'' : [https://silico/biotoul.fr/enseignement/m2bbs/idh/Ecoli.knowledge.base.html Ecoli.knowledge.base.html]</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline">** Intégration de données d'expression </ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline">** Intégration de données d'interaction protéine-protéine</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline">** Intégration de données phylogénomiques</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline">** Gènes co-exprimés et interactions protéiques et lien phylogénomique</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div> </div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline">* [[Media:M2BBS - Integration de Donnees Heterogenes - Enrichissement.pdf|Recherche de caractéristiques sur-représentées]]</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline">** Intégration de données d'annotation et recherche d'annotations sur-représentées chez les gènes/protéines partageant un lien de coexpression/interaction/phylogénomique</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div> </div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div> </div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del style="color: red; font-weight: bold; text-decoration: none;">http://silico.biotoul.fr/enseignement/m2bbs/idh/ppi.vs.coexp.html</del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><!-- obsoleted in 2020/09</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><!-- obsoleted in 2020/09</div></td></tr>
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Barriot
http://silico.biotoul.fr/site/index.php?title=M2BBS_-_IDH&diff=7281&oldid=prev
Barriot: /* Intégration dans une base de données orientée graphes */
2020-09-29T08:41:49Z
<p><span class="autocomment">Intégration dans une base de données orientée graphes</span></p>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>Installation (cf.https://neo4j.com/docs/operations-manual/current/installation/)</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>Installation (cf.https://neo4j.com/docs/operations-manual/current/installation/)</div></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div> version=4.1.<del class="diffchange diffchange-inline">1</del></div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div> version=4.1.<ins class="diffchange diffchange-inline">2</ins></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> tar tf neo4j-community-$version-unix.tar.gz</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> tar tf neo4j-community-$version-unix.tar.gz</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> tar xf neo4j-community-$version-unix.tar.gz</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> tar xf neo4j-community-$version-unix.tar.gz</div></td></tr>
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Barriot
http://silico.biotoul.fr/site/index.php?title=M2BBS_-_IDH&diff=7280&oldid=prev
Barriot: /* Intégration dans une base de données orientée graphes */
2020-09-29T08:41:28Z
<p><span class="autocomment">Intégration dans une base de données orientée graphes</span></p>
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<td colspan='2' style="background-color: white; color:black;">Revision as of 08:41, 29 September 2020</td>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>Installation (cf.https://neo4j.com/docs/operations-manual/current/installation/)</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>Installation (cf.https://neo4j.com/docs/operations-manual/current/installation/)</div></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div> version=<del class="diffchange diffchange-inline">3</del>.<del class="diffchange diffchange-inline">5</del>.<del class="diffchange diffchange-inline">9</del></div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div> version=<ins class="diffchange diffchange-inline">4</ins>.<ins class="diffchange diffchange-inline">1</ins>.<ins class="diffchange diffchange-inline">1</ins></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> tar tf neo4j-community-$version-unix.tar.gz</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> tar tf neo4j-community-$version-unix.tar.gz</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> tar xf neo4j-community-$version-unix.tar.gz</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> tar xf neo4j-community-$version-unix.tar.gz</div></td></tr>
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Barriot
http://silico.biotoul.fr/site/index.php?title=M2BBS_-_IDH&diff=7279&oldid=prev
Barriot: /* Prise en main de la librairie R/Bioconductor R-STRINGdb */
2020-09-29T08:36:05Z
<p><span class="autocomment">Prise en main de la librairie R/Bioconductor R-STRINGdb</span></p>
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<td colspan='2' style="background-color: white; color:black;">Revision as of 08:36, 29 September 2020</td>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>http://silico.biotoul.fr/enseignement/m2bbs/idh/ppi.vs.coexp.html</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>http://silico.biotoul.fr/enseignement/m2bbs/idh/ppi.vs.coexp.html</div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;"></ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;"><!-- obsoleted in 2020/09</ins></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>=Prise en main de la librairie R/Bioconductor R-STRINGdb=</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>=Prise en main de la librairie R/Bioconductor R-STRINGdb=</div></td></tr>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>* Afficher le sous graphe pour les groupe de gènes <tt>ALAS ARGS ASNS ASPS CYSS GLTX GLYQ GLYS HISS ILES</tt>. A quoi correspond la p-valeur affichée ?</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>* Afficher le sous graphe pour les groupe de gènes <tt>ALAS ARGS ASNS ASPS CYSS GLTX GLYQ GLYS HISS ILES</tt>. A quoi correspond la p-valeur affichée ?</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>* Télécharger les annotations associées à chaque sommet.</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>* Télécharger les annotations associées à chaque sommet.</div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;"></ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">--></ins></div></td></tr>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>= Enrichment analysis =</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>= Enrichment analysis =</div></td></tr>
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Barriot
http://silico.biotoul.fr/site/index.php?title=M2BBS_-_IDH&diff=7253&oldid=prev
Barriot: /* Prise en main de la librairie R/Bioconductor R-STRINGdb */
2020-09-25T13:42:07Z
<p><span class="autocomment">Prise en main de la librairie R/Bioconductor R-STRINGdb</span></p>
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<td colspan='2' style="background-color: white; color:black;">← Older revision</td>
<td colspan='2' style="background-color: white; color:black;">Revision as of 13:42, 25 September 2020</td>
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<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">= Analyses préliminaires sur les données d'''E. coli'' = </ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;"></ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">http://silico.biotoul.fr/enseignement/m2bbs/idh/ppi.vs.coexp.html</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;"></ins></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>=Prise en main de la librairie R/Bioconductor R-STRINGdb=</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>=Prise en main de la librairie R/Bioconductor R-STRINGdb=</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
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Barriot
http://silico.biotoul.fr/site/index.php?title=M2BBS_-_IDH&diff=7045&oldid=prev
Barriot: /* Neo4j */
2020-09-15T08:04:32Z
<p><span class="autocomment">Neo4j</span></p>
<table style="background-color: white; color:black;">
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<td colspan='2' style="background-color: white; color:black;">← Older revision</td>
<td colspan='2' style="background-color: white; color:black;">Revision as of 08:04, 15 September 2020</td>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> WHERE t1.id=line.term1_id AND t2.id=line.term2_id </div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> WHERE t1.id=line.term1_id AND t2.id=line.term2_id </div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> WITH t1,t2</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> WITH t1,t2</div></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div> MERGE (<del class="diffchange diffchange-inline">t1</del>)-[:IS_A]->(<del class="diffchange diffchange-inline">t2</del>)</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div> MERGE (<ins class="diffchange diffchange-inline">t2</ins>)-[:IS_A]->(<ins class="diffchange diffchange-inline">t1</ins>)</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> </div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> </div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>* ajout des relations <tt>part_of</tt></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>* ajout des relations <tt>part_of</tt></div></td></tr>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> WHERE t1.id=line.term1_id AND t2.id=line.term2_id </div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> WHERE t1.id=line.term1_id AND t2.id=line.term2_id </div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> WITH t1,t2</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> WITH t1,t2</div></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div> MERGE (<del class="diffchange diffchange-inline">t1</del>)-[:PART_OF]->(<del class="diffchange diffchange-inline">t2</del>)</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div> MERGE (<ins class="diffchange diffchange-inline">t2</ins>)-[:PART_OF]->(<ins class="diffchange diffchange-inline">t1</ins>)</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>Ajout des sommets correspondants aux protéines</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>Ajout des sommets correspondants aux protéines</div></td></tr>
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Barriot
http://silico.biotoul.fr/site/index.php?title=M2BBS_-_IDH&diff=7044&oldid=prev
Barriot: /* Neo4j */
2020-09-15T07:09:01Z
<p><span class="autocomment">Neo4j</span></p>
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<col class='diff-marker' />
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<td colspan='2' style="background-color: white; color:black;">← Older revision</td>
<td colspan='2' style="background-color: white; color:black;">Revision as of 07:09, 15 September 2020</td>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> MATCH (n:GOTerm {name: 'reproduction'} ) RETURN n</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> MATCH (n:GOTerm {name: 'reproduction'} ) RETURN n</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> </div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> </div></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>Ajout des relations de type <tt>is_a</tt></div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>Ajout des relations de type <tt>is_a</tt> <ins class="diffchange diffchange-inline">et <tt>part_of</tt>. On recherche leur identifiant interne (qui change régulièrement) :</ins></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><source lang='sql'></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><source lang='sql'></div></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>SELECT * FROM term WHERE <del class="diffchange diffchange-inline">name = 'is_a' OR name = 'part_of'</del>;</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>SELECT * FROM term WHERE <ins class="diffchange diffchange-inline">is_relation</ins>;</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div></source></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div></source></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><source lang='bash'></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><source lang='bash'></div></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div># IS_A (1)</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div># IS_A (<ins class="diffchange diffchange-inline">internal term id = </ins>1)</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>mysql -uroot -p go -B -e "SELECT term1_id, term2_id FROM term2term WHERE relationship_type_id = 1" > neo4j-community/import/go.rel.is_a.dump.txt</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>mysql -uroot -p go -B -e "SELECT term1_id, term2_id FROM term2term WHERE relationship_type_id = 1" > neo4j-community/import/go.rel.is_a.dump.txt</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div></source></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div></source></div></td></tr>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> </div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> </div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>* ajout des relations <tt>part_of</tt></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>* ajout des relations <tt>part_of</tt></div></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div> # PART_OF (20)</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div> # PART_OF (<ins class="diffchange diffchange-inline">internal term id = </ins>20)</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> mysql -uroot -p go -B -e "SELECT term1_id, term2_id FROM term2term WHERE relationship_type_id = 20" > neo4j-community/import/go.rel.part_of.dump.txt</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> mysql -uroot -p go -B -e "SELECT term1_id, term2_id FROM term2term WHERE relationship_type_id = 20" > neo4j-community/import/go.rel.part_of.dump.txt</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> vi neo4j-community/import/go.rel.part_of.dump.txt</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> vi neo4j-community/import/go.rel.part_of.dump.txt</div></td></tr>
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Barriot