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TD2 Bioanalyse - Revision history
2024-03-29T07:31:27Z
Revision history for this page on the wiki
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http://silico.biotoul.fr/site/index.php?title=TD2_Bioanalyse&diff=8971&oldid=prev
Gaulin: /* EXERCICE 5 : des exemples d'utilisation et d'interprétation des Dotplots */
2022-01-28T09:21:13Z
<p><span class="autocomment">EXERCICE 5 : des exemples d'utilisation et d'interprétation des Dotplots</span></p>
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<td colspan='2' style="background-color: white; color:black;">Revision as of 09:21, 28 January 2022</td>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>=EXERCICE 5 : des exemples d'utilisation et d'interprétation des Dotplots=</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>=EXERCICE 5 : des exemples d'utilisation et d'interprétation des Dotplots=</div></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del class="diffchange diffchange-inline"><!--version distanciel exo 1 supprimé--></del></div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div> </div></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>'''1/''' Vous allez maintenant comparer deux autres séquences: ce sont deux facteurs de transcription ERG1/krox 24 et sp1, contenus dans les fichiers [[Media:Krox24.seq|Krox24]] et [[Media:sp1.seq|sp1]].</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>'''1/''' Vous allez maintenant comparer deux autres séquences: ce sont deux facteurs de transcription <ins class="diffchange diffchange-inline">humain: </ins>ERG1/krox 24 et sp1, contenus dans les fichiers [[Media:Krox24.seq|Krox24]] et [[Media:sp1.seq|sp1]].</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>*Construisez un dotplot avec '''dotmatcher''' de ces deux séquences. Vous devez observer une similitude locale.</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>*Construisez un dotplot avec '''dotmatcher''' de ces deux séquences. Vous devez observer une similitude locale.</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>*Comparez ensuite les deux séquences avec un alignement local en utilisant '''matcher''' (paramètres par défaut Gap penalty 14 et Gap length penalty 4). </div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>*Comparez ensuite les deux séquences avec un alignement local en utilisant '''matcher''' (paramètres par défaut Gap penalty 14 et Gap length penalty 4). </div></td></tr>
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Gaulin
http://silico.biotoul.fr/site/index.php?title=TD2_Bioanalyse&diff=8970&oldid=prev
Gaulin: /* EXERCICE 5 : des exemples d'utilisation et d'interprétation des Dotplots */
2022-01-28T09:19:05Z
<p><span class="autocomment">EXERCICE 5 : des exemples d'utilisation et d'interprétation des Dotplots</span></p>
<table style="background-color: white; color:black;">
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<td colspan='2' style="background-color: white; color:black;">← Older revision</td>
<td colspan='2' style="background-color: white; color:black;">Revision as of 09:19, 28 January 2022</td>
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<tr><td colspan="2" class="diff-lineno">Line 125:</td>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>=EXERCICE 5 : des exemples d'utilisation et d'interprétation des Dotplots=</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>=EXERCICE 5 : des exemples d'utilisation et d'interprétation des Dotplots=</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><!--version distanciel exo 1 supprimé--></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><!--version distanciel exo 1 supprimé--></div></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>'''1/''' Vous allez maintenant comparer deux autres séquences: ce sont deux facteurs de transcription krox 24 et sp1, contenus dans les fichiers [[Media:Krox24.seq|Krox24]] et [[Media:sp1.seq|sp1]].</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>'''1/''' Vous allez maintenant comparer deux autres séquences: ce sont deux facteurs de transcription <ins class="diffchange diffchange-inline">ERG1/</ins>krox 24 et sp1, contenus dans les fichiers [[Media:Krox24.seq|Krox24]] et [[Media:sp1.seq|sp1]].</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>*Construisez un dotplot avec '''dotmatcher''' de ces deux séquences. Vous devez observer une similitude locale.</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>*Construisez un dotplot avec '''dotmatcher''' de ces deux séquences. Vous devez observer une similitude locale.</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>*Comparez ensuite les deux séquences avec un alignement local en utilisant '''matcher''' (paramètres par défaut Gap penalty 14 et Gap length penalty 4). </div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>*Comparez ensuite les deux séquences avec un alignement local en utilisant '''matcher''' (paramètres par défaut Gap penalty 14 et Gap length penalty 4). </div></td></tr>
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Gaulin
http://silico.biotoul.fr/site/index.php?title=TD2_Bioanalyse&diff=8969&oldid=prev
Gaulin: /* EXERCICE 2 : un cas d'école pour comparer alignement local et semi-global */
2022-01-28T09:09:03Z
<p><span class="autocomment">EXERCICE 2 : un cas d'école pour comparer alignement local et semi-global</span></p>
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<td colspan='2' style="background-color: white; color:black;">← Older revision</td>
<td colspan='2' style="background-color: white; color:black;">Revision as of 09:09, 28 January 2022</td>
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<tr><td colspan="2" class="diff-lineno">Line 52:</td>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>MVMEYLVLEKRLKRLREVLEKRQKDLIVFADNVKNEHNFSAIVRTCDAVATWLSKESVNF</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>MVMEYLVLEKRLKRLREVLEKRQKDLIVFADNVKNEHNFSAIVRTCDAVATWLSKESVNF</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>REVDYTKPTVLVVGNELQGVSPEIVEIAVGVLYLYYYHAEGKKAKINEGI</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>REVDYTKPTVLVVGNELQGVSPEIVEIAVGVLYLYYYHAEGKKAKINEGI</div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;"></ins></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
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Gaulin
http://silico.biotoul.fr/site/index.php?title=TD2_Bioanalyse&diff=8968&oldid=prev
Gaulin: /* EXERCICE 2 : un cas d'école pour comparer alignement local et semi-global */
2022-01-28T09:06:31Z
<p><span class="autocomment">EXERCICE 2 : un cas d'école pour comparer alignement local et semi-global</span></p>
<table style="background-color: white; color:black;">
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<td colspan='2' style="background-color: white; color:black;">← Older revision</td>
<td colspan='2' style="background-color: white; color:black;">Revision as of 09:06, 28 January 2022</td>
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<tr><td colspan="2" class="diff-lineno">Line 40:</td>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>Voici 2 séquences, au format FASTA :</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>Voici 2 séquences, au format FASTA :</div></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del style="color: red; font-weight: bold; text-decoration: none;"></del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del style="color: red; font-weight: bold; text-decoration: none;">>prot2</del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del style="color: red; font-weight: bold; text-decoration: none;"></del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del style="color: red; font-weight: bold; text-decoration: none;">MVMEYLVLEKRLKRLREVLEKRQKDLIVFADNVKNEHNFSAIVRTCDAVATWLSKESVNF</del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del style="color: red; font-weight: bold; text-decoration: none;">REVDYTKPTVLVVGNELQGVSPEIVEIAVGVLYLYYYHAEGKKAKINEGI</del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>>prot1</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>>prot1</div></td></tr>
<tr><td colspan="2" class="diff-lineno">Line 53:</td>
<td colspan="2" class="diff-lineno">Line 48:</td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>PSLSEEEIQKILKKWAYEDVIKERKRTLSTS</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>PSLSEEEIQKILKKWAYEDVIKERKRTLSTS</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">>prot2</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;"></ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">MVMEYLVLEKRLKRLREVLEKRQKDLIVFADNVKNEHNFSAIVRTCDAVATWLSKESVNF</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">REVDYTKPTVLVVGNELQGVSPEIVEIAVGVLYLYYYHAEGKKAKINEGI</ins></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
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Gaulin
http://silico.biotoul.fr/site/index.php?title=TD2_Bioanalyse&diff=8967&oldid=prev
Gaulin: /* EXERCICE 2 : un cas d'école pour comparer alignement local et semi-global */
2022-01-28T09:04:58Z
<p><span class="autocomment">EXERCICE 2 : un cas d'école pour comparer alignement local et semi-global</span></p>
<table style="background-color: white; color:black;">
<col class='diff-marker' />
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<td colspan='2' style="background-color: white; color:black;">← Older revision</td>
<td colspan='2' style="background-color: white; color:black;">Revision as of 09:04, 28 January 2022</td>
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<tr><td colspan="2" class="diff-lineno">Line 45:</td>
<td colspan="2" class="diff-lineno">Line 45:</td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>MVMEYLVLEKRLKRLREVLEKRQKDLIVFADNVKNEHNFSAIVRTCDAVATWLSKESVNF</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>MVMEYLVLEKRLKRLREVLEKRQKDLIVFADNVKNEHNFSAIVRTCDAVATWLSKESVNF</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>REVDYTKPTVLVVGNELQGVSPEIVEIAVGVLYLYYYHAEGKKAKINEGI</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>REVDYTKPTVLVVGNELQGVSPEIVEIAVGVLYLYYYHAEGKKAKINEGI</div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;"></ins></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>>prot1</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>>prot1</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
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</table>
Gaulin
http://silico.biotoul.fr/site/index.php?title=TD2_Bioanalyse&diff=8966&oldid=prev
Gaulin: /* EXERCICE 2 : un cas d'école pour comparer alignement local et semi-global */
2022-01-28T09:04:47Z
<p><span class="autocomment">EXERCICE 2 : un cas d'école pour comparer alignement local et semi-global</span></p>
<table style="background-color: white; color:black;">
<col class='diff-marker' />
<col class='diff-content' />
<col class='diff-marker' />
<col class='diff-content' />
<tr valign='top'>
<td colspan='2' style="background-color: white; color:black;">← Older revision</td>
<td colspan='2' style="background-color: white; color:black;">Revision as of 09:04, 28 January 2022</td>
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<tr><td colspan="2" class="diff-lineno">Line 41:</td>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>Voici 2 séquences, au format FASTA :</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>Voici 2 séquences, au format FASTA :</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">>prot2</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;"></ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">MVMEYLVLEKRLKRLREVLEKRQKDLIVFADNVKNEHNFSAIVRTCDAVATWLSKESVNF</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">REVDYTKPTVLVVGNELQGVSPEIVEIAVGVLYLYYYHAEGKKAKINEGI</ins></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>>prot1</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>>prot1</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del class="diffchange diffchange-inline">MVMEYLVLEKRLKRLREVLEKRQKDLIVFADNVKNEHNFSAIVRTCDAVGVLYLYYYHAEGKKAKINEGITQGSHKWVFIEKVDNPVQKLLEFKNRGFQIVATWLSKESVNFREVDYTKPTVLVVGNELQGVSPEIVEIADKKIVIPMYGMAQSLNVSVATGIILYEAQRQREEKGMYSRPSLSEEEIQKILKKWAYEDVIKERKRTLSTS</del></div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline">MVMEYLVLEKRLKRLREVLEKRQKDLIVFADNVKNEHNFSAIVRTCDAVGVLYLYYYHAE</ins></div></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div> </div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline">GKKAKINEGITQGSHKWVFIEKVDNPVQKLLEFKNRGFQIVATWLSKESVNFREVDYTKP</ins></div></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del class="diffchange diffchange-inline">>prot2</del></div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline">TVLVVGNELQGVSPEIVEIADKKIVIPMYGMAQSLNVSVATGIILYEAQRQREEKGMYSR</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline">PSLSEEEIQKILKKWAYEDVIKERKRTLSTS</ins></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del style="color: red; font-weight: bold; text-decoration: none;">MVMEYLVLEKRLKRLREVLEKRQKDLIVFADNVKNEHNFSAIVRTCDAVATWLSKESVNFREVDYTKPTVLVVGNELQGVSPEIVEIAVGVLYLYYYHAEGKKAKINEGI</del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
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Gaulin
http://silico.biotoul.fr/site/index.php?title=TD2_Bioanalyse&diff=8965&oldid=prev
Gaulin: /* EXERCICE 2 : un cas d'école pour comparer alignement local et semi-global */
2022-01-28T08:57:24Z
<p><span class="autocomment">EXERCICE 2 : un cas d'école pour comparer alignement local et semi-global</span></p>
<table style="background-color: white; color:black;">
<col class='diff-marker' />
<col class='diff-content' />
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<td colspan='2' style="background-color: white; color:black;">← Older revision</td>
<td colspan='2' style="background-color: white; color:black;">Revision as of 08:57, 28 January 2022</td>
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<tr><td colspan="2" class="diff-lineno">Line 43:</td>
<td colspan="2" class="diff-lineno">Line 43:</td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>>prot1</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>>prot1</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del class="diffchange diffchange-inline">MVMEYLVLEKRLKRLREVLEKRQKDLIVFADNVKNEHNFSAIVRTCDAVGVLYLYYYHAE</del></div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline">MVMEYLVLEKRLKRLREVLEKRQKDLIVFADNVKNEHNFSAIVRTCDAVGVLYLYYYHAEGKKAKINEGITQGSHKWVFIEKVDNPVQKLLEFKNRGFQIVATWLSKESVNFREVDYTKPTVLVVGNELQGVSPEIVEIADKKIVIPMYGMAQSLNVSVATGIILYEAQRQREEKGMYSRPSLSEEEIQKILKKWAYEDVIKERKRTLSTS</ins></div></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del class="diffchange diffchange-inline">GKKAKINEGITQGSHKWVFIEKVDNPVQKLLEFKNRGFQIVATWLSKESVNFREVDYTKP</del></div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div></div></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del class="diffchange diffchange-inline">TVLVVGNELQGVSPEIVEIADKKIVIPMYGMAQSLNVSVATGIILYEAQRQREEKGMYSR</del></div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div></div></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del class="diffchange diffchange-inline">PSLSEEEIQKILKKWAYEDVIKERKRTLSTS</del></div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>>prot2</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>>prot2</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del class="diffchange diffchange-inline">MVMEYLVLEKRLKRLREVLEKRQKDLIVFADNVKNEHNFSAIVRTCDAVATWLSKESVNF</del></div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline">MVMEYLVLEKRLKRLREVLEKRQKDLIVFADNVKNEHNFSAIVRTCDAVATWLSKESVNFREVDYTKPTVLVVGNELQGVSPEIVEIAVGVLYLYYYHAEGKKAKINEGI</ins></div></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del class="diffchange diffchange-inline">REVDYTKPTVLVVGNELQGVSPEIVEIAVGVLYLYYYHAEGKKAKINEGI</del></div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<!-- diff generator: internal 2024-03-29 07:31:27 -->
</table>
Gaulin
http://silico.biotoul.fr/site/index.php?title=TD2_Bioanalyse&diff=8964&oldid=prev
Gaulin: /* EXERCICE 2 : un cas d'école pour comparer alignement local et semi-global */
2022-01-28T08:56:00Z
<p><span class="autocomment">EXERCICE 2 : un cas d'école pour comparer alignement local et semi-global</span></p>
<table style="background-color: white; color:black;">
<col class='diff-marker' />
<col class='diff-content' />
<col class='diff-marker' />
<col class='diff-content' />
<tr valign='top'>
<td colspan='2' style="background-color: white; color:black;">← Older revision</td>
<td colspan='2' style="background-color: white; color:black;">Revision as of 08:56, 28 January 2022</td>
</tr>
<tr><td colspan="2" class="diff-lineno">Line 40:</td>
<td colspan="2" class="diff-lineno">Line 40:</td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>Voici 2 séquences, au format FASTA :</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>Voici 2 séquences, au format FASTA :</div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;"></ins></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>>prot1</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>>prot1</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<!-- diff generator: internal 2024-03-29 07:31:27 -->
</table>
Gaulin
http://silico.biotoul.fr/site/index.php?title=TD2_Bioanalyse&diff=8963&oldid=prev
Gaulin: /* EXERCICE 2 : un cas d'école pour comparer alignement local et semi-global */
2022-01-28T08:55:53Z
<p><span class="autocomment">EXERCICE 2 : un cas d'école pour comparer alignement local et semi-global</span></p>
<table style="background-color: white; color:black;">
<col class='diff-marker' />
<col class='diff-content' />
<col class='diff-marker' />
<col class='diff-content' />
<tr valign='top'>
<td colspan='2' style="background-color: white; color:black;">← Older revision</td>
<td colspan='2' style="background-color: white; color:black;">Revision as of 08:55, 28 January 2022</td>
</tr>
<tr><td colspan="2" class="diff-lineno">Line 41:</td>
<td colspan="2" class="diff-lineno">Line 41:</td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>Voici 2 séquences, au format FASTA :</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>Voici 2 séquences, au format FASTA :</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>>prot1</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>>prot1</div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;"></ins></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>MVMEYLVLEKRLKRLREVLEKRQKDLIVFADNVKNEHNFSAIVRTCDAVGVLYLYYYHAE</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>MVMEYLVLEKRLKRLREVLEKRQKDLIVFADNVKNEHNFSAIVRTCDAVGVLYLYYYHAE</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>GKKAKINEGITQGSHKWVFIEKVDNPVQKLLEFKNRGFQIVATWLSKESVNFREVDYTKP</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>GKKAKINEGITQGSHKWVFIEKVDNPVQKLLEFKNRGFQIVATWLSKESVNFREVDYTKP</div></td></tr>
<tr><td colspan="2" class="diff-lineno">Line 47:</td>
<td colspan="2" class="diff-lineno">Line 48:</td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>>prot2</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>>prot2</div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;"></ins></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>MVMEYLVLEKRLKRLREVLEKRQKDLIVFADNVKNEHNFSAIVRTCDAVATWLSKESVNF</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>MVMEYLVLEKRLKRLREVLEKRQKDLIVFADNVKNEHNFSAIVRTCDAVATWLSKESVNF</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>REVDYTKPTVLVVGNELQGVSPEIVEIAVGVLYLYYYHAEGKKAKINEGI</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>REVDYTKPTVLVVGNELQGVSPEIVEIAVGVLYLYYYHAEGKKAKINEGI</div></td></tr>
<!-- diff generator: internal 2024-03-29 07:31:27 -->
</table>
Gaulin
http://silico.biotoul.fr/site/index.php?title=TD2_Bioanalyse&diff=8962&oldid=prev
Gaulin: /* EXERCICE 2 : un cas d'école pour comparer alignement local et semi-global */
2022-01-28T08:55:43Z
<p><span class="autocomment">EXERCICE 2 : un cas d'école pour comparer alignement local et semi-global</span></p>
<table style="background-color: white; color:black;">
<col class='diff-marker' />
<col class='diff-content' />
<col class='diff-marker' />
<col class='diff-content' />
<tr valign='top'>
<td colspan='2' style="background-color: white; color:black;">← Older revision</td>
<td colspan='2' style="background-color: white; color:black;">Revision as of 08:55, 28 January 2022</td>
</tr>
<tr><td colspan="2" class="diff-lineno">Line 40:</td>
<td colspan="2" class="diff-lineno">Line 40:</td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>Voici 2 séquences, au format FASTA :</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>Voici 2 séquences, au format FASTA :</div></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del style="color: red; font-weight: bold; text-decoration: none;"></del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>>prot1</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>>prot1</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>MVMEYLVLEKRLKRLREVLEKRQKDLIVFADNVKNEHNFSAIVRTCDAVGVLYLYYYHAE</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>MVMEYLVLEKRLKRLREVLEKRQKDLIVFADNVKNEHNFSAIVRTCDAVGVLYLYYYHAE</div></td></tr>
<!-- diff generator: internal 2024-03-29 07:31:27 -->
</table>
Gaulin