Prioritization:EcolA Transcriptome
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== Normalization == | == Normalization == | ||
* within array normalization: '''RMA''' normalization was applied using the R/Bioconductor affy library. | * within array normalization: '''RMA''' normalization was applied using the R/Bioconductor affy library. | ||
- | * between array normalization: each value was divided by the | + | * between array normalization: each value was divided by the mean of the array values ''i.e.'', x/mean(x) |
= Identifiers mapping = | = Identifiers mapping = | ||
[[file:EcolA.GPL199.mapping.txt]] | [[file:EcolA.GPL199.mapping.txt]] |
Current revision as of 16:04, 18 January 2011
Contents |
Transcriptome data for Escherichia coli K-12
GEO data
- GPL: 199]
- arrays: A total set of 631 arrays have been compiled.
- List of selected GSE series: 1121, 4511, 4556, 4562, 4778, 6425, 6426, 6836, 6923, 7326, 7379, 7885, 8708, 9582, 9755, 9814, 10158, 10974, 11183, 12797, 13418, 17505, 17506, 17507
Raw data have been used i.e., CEL files.
Normalization
- within array normalization: RMA normalization was applied using the R/Bioconductor affy library.
- between array normalization: each value was divided by the mean of the array values i.e., x/mean(x)