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Revision as of 11:47, 20 January 2011 (view source) Barriot (Talk | contribs) m (Created page with '= Transcriptome data for ''Pseudomonas aeruginosa'' PAO1= == GEO data == * GPL: [http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GPL84 84]] * arrays: A total set of 192 arrays…') ← Older edit		Current revision as of 11:48, 20 January 2011 (view source) Barriot (Talk | contribs) m
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Current revision as of 11:48, 20 January 2011

Contents 1 Transcriptome data for Pseudomonas aeruginosa PAO1 1.1 GEO data 1.2 Normalization 2 Identifiers mapping

Transcriptome data for Pseudomonas aeruginosa PAO1

GEO data

• GPL: 84]
• arrays: A total set of 192 arrays have been compiled.
• List of selected GSE series: GSE10030, GSE10065, GSE10604, GSE11544, GSE12207, GSE12678, GSE12738, GSE13252, GSE14253, GSE15697, GSE17296, GSE2430, GSE4026, GSE6741, GSE6769, GSE7266, GSE7704, GSE8083, GSE8953, GSE9657, GSE9926, GSE9989, GSE9991

Raw data have been used i.e., CEL files.

Normalization

• within array normalization: RMA normalization was applied using the R/Bioconductor affy library.
• between array normalization: each value was divided by the mean of the array values i.e., x/mean(x)

Identifiers mapping

File:PaerA.GPL84.mapping.txt