Prioritization:Interactome

From silico.biotoul.fr

Proximity measure

The proximity measure implemented is currently the following: a distance matrix is built consisting of all pairs shortest paths in the interaction graph. The proximity of a candidate gene to a set of genes is then computed as the average distance of the candidate gene to each known gene.

Data

There is currently only one dataset available : Escherichia coli physical interactions contained in the Ecid database, see http://ecid.bioinfo.cnio.es/.