Prioritization:Interactome
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(Created page with '== Proximity measure == The proximity measure implemented is currently the following: a distance matrix is built consisting of all pairs shortest paths in the interaction graph. …')
(Created page with '== Proximity measure == The proximity measure implemented is currently the following: a distance matrix is built consisting of all pairs shortest paths in the interaction graph. …')
Current revision as of 11:42, 21 January 2011
Proximity measure
The proximity measure implemented is currently the following: a distance matrix is built consisting of all pairs shortest paths in the interaction graph. The proximity of a candidate gene to a set of genes is then computed as the average distance of the candidate gene to each known gene.
Data
There is currently only one dataset available : Escherichia coli physical interactions contained in the Ecid database, see http://ecid.bioinfo.cnio.es/.
